PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933663.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 499aa MW: 57526.7 Da PI: 7.3634

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933663.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.3	6e-11	98	151	1	57
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenl 57 +W+++e laL+++r+++++ + ++ We+vs++ e gf+r+p +Ckek+e+ XP_022933663.1 98 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRYRklGEVGFTRTPDKCKEKFEDE 151 7****************99998.....9*986669**************96 PP
2	trihelix	90.5	1.8e-28	375	476	1	86
trihelix 1 rWtkqevlaLiearr........emeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 rW+++evlaL+++r + + lk+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kk XP_022933663.1 375 RWPRDEVLALVNVRCslydnnsnN--------NnnnsdqdksggtdqatlLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKK 461 8***********9554443330........223455666777777888***************************************** PP trihelix 71 rtsessstcpyfdqle 86 r s +s+tcpyf+ql XP_022933663.1 462 R-SIDSRTCPYFHQLS 476 8.78889*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MFEGSVSEQL HQFLAPRTTT TTTTTTTPPN SNSLPFLLHS PNFNFHPFDS YNPSSNHHLV 60 HQSSENDNET TTTTTTTMAN LSVAMDLEDH NHHNHHNQWS NDELLALLRI RSNIDNCFPE 120 STWEHVSRYR KLGEVGFTRT PDKCKEKFED EKTEDGGAVV VVPEEAKHER GNDNNDNNDD 180 NDEQQQSSSK SKRKRKTRTT RQREFEVLKG YCEDIVKNMM IQQEEIHSKL LHEMLKREEE 240 KIAKEECWKK QQMERFHKEL QMMAQEQAIA SDRQATMIEI LNQISISNPF SSSKSKKDLQ 300 NLLHSLNHHH NNNNNLPNSP SSSSLIQTQN PKNPSSSTQI LPPQDPNSNP PPFSIQKLPQ 360 NPKTREKEVD DLGKRWPRDE VLALVNVRCS LYDNNSNNNN NNSDQDKSGG TDQATLLKAP 420 LWERISQGML QLGYKRSAKR CKEKWENINK YFRKTKDVNK KRSIDSRTCP YFHQLSTLYN 480 QGGNRSMENL PDNVVGKPL

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MFEGSVSEQL HQFLAPRTTT TTTTTTTPPN SNSLPFLLHS PNFNFHPFDS YNPSSNHHLV  60
HQSSENDNET TTTTTTTMAN LSVAMDLEDH NHHNHHNQWS NDELLALLRI RSNIDNCFPE  120
STWEHVSRYR KLGEVGFTRT PDKCKEKFED EKTEDGGAVV VVPEEAKHER GNDNNDNNDD  180
NDEQQQSSSK SKRKRKTRTT RQREFEVLKG YCEDIVKNMM IQQEEIHSKL LHEMLKREEE  240
KIAKEECWKK QQMERFHKEL QMMAQEQAIA SDRQATMIEI LNQISISNPF SSSKSKKDLQ  300
NLLHSLNHHH NNNNNLPNSP SSSSLIQTQN PKNPSSSTQI LPPQDPNSNP PPFSIQKLPQ  360
NPKTREKEVD DLGKRWPRDE VLALVNVRCS LYDNNSNNNN NNSDQDKSGG TDQATLLKAP  420
LWERISQGML QLGYKRSAKR CKEKWENINK YFRKTKDVNK KRSIDSRTCP YFHQLSTLYN  480
QGGNRSMENL PDNVVGKPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	2e-72	Trihelix family protein