PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933664.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 497aa MW: 57207.3 Da PI: 7.2193

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933664.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.7	6.1e-13	98	149	1	57
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenl 57 +W+++e laL+++r+++++ + ++ We+vs+k+ e gf+r+p +Ckek+e+ XP_022933664.1 98 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRKLGEVGFTRTPDKCKEKFEDE 149 7****************99998.....9***********************96 PP
2	trihelix	90.5	1.8e-28	373	474	1	86
trihelix 1 rWtkqevlaLiearr........emeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 rW+++evlaL+++r + + lk+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kk XP_022933664.1 373 RWPRDEVLALVNVRCslydnnsnN--------NnnnsdqdksggtdqatlLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKK 459 8***********9554443330........223455666777777888***************************************** PP trihelix 71 rtsessstcpyfdqle 86 r s +s+tcpyf+ql XP_022933664.1 460 R-SIDSRTCPYFHQLS 474 8.78889*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MFEGSVSEQL HQFLAPRTTT TTTTTTTPPN SNSLPFLLHS PNFNFHPFDS YNPSSNHHLV 60 HQSSENDNET TTTTTTTMAN LSVAMDLEDH NHHNHHNQWS NDELLALLRI RSNIDNCFPE 120 STWEHVSRKL GEVGFTRTPD KCKEKFEDEK TEDGGAVVVV PEEAKHERGN DNNDNNDDND 180 EQQQSSSKSK RKRKTRTTRQ REFEVLKGYC EDIVKNMMIQ QEEIHSKLLH EMLKREEEKI 240 AKEECWKKQQ MERFHKELQM MAQEQAIASD RQATMIEILN QISISNPFSS SKSKKDLQNL 300 LHSLNHHHNN NNNLPNSPSS SSLIQTQNPK NPSSSTQILP PQDPNSNPPP FSIQKLPQNP 360 KTREKEVDDL GKRWPRDEVL ALVNVRCSLY DNNSNNNNNN SDQDKSGGTD QATLLKAPLW 420 ERISQGMLQL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SIDSRTCPYF HQLSTLYNQG 480 GNRSMENLPD NVVGKPL

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MFEGSVSEQL HQFLAPRTTT TTTTTTTPPN SNSLPFLLHS PNFNFHPFDS YNPSSNHHLV  60
HQSSENDNET TTTTTTTMAN LSVAMDLEDH NHHNHHNQWS NDELLALLRI RSNIDNCFPE  120
STWEHVSRKL GEVGFTRTPD KCKEKFEDEK TEDGGAVVVV PEEAKHERGN DNNDNNDDND  180
EQQQSSSKSK RKRKTRTTRQ REFEVLKGYC EDIVKNMMIQ QEEIHSKLLH EMLKREEEKI  240
AKEECWKKQQ MERFHKELQM MAQEQAIASD RQATMIEILN QISISNPFSS SKSKKDLQNL  300
LHSLNHHHNN NNNLPNSPSS SSLIQTQNPK NPSSSTQILP PQDPNSNPPP FSIQKLPQNP  360
KTREKEVDDL GKRWPRDEVL ALVNVRCSLY DNNSNNNNNN SDQDKSGGTD QATLLKAPLW  420
ERISQGMLQL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SIDSRTCPYF HQLSTLYNQG  480
GNRSMENLPD NVVGKPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	2e-72	Trihelix family protein