PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933836.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 469aa MW: 52942.8 Da PI: 6.05

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933836.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.6	9.2e-25	115	214	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li+a+ +++++ ++++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_022933836.1 115 KWTDMMVRLLITAVFYIGDEGGTEQadhagkkkpvgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQTL 209 7******************99877788889999999******************************************559*****9 PP trihelix 82 fdqle 86 +d++e XP_022933836.1 210 LDSME 214 99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MESDSLGSDG GGGGGGGGGM FSGLNSAMLG LDLPLHPHPT NPPNSHQLHH ASMVSYAPQK 60 PQLQQQPPPT AVRYPYPAKP KPQQSNLSDD EEQGFAVEDG NSDGKKKISP WQRMKWTDMM 120 VRLLITAVFY IGDEGGTEQA DHAGKKKPVG LLQKKGKWKS VSRAMMEKGF YVSPQQCEDK 180 FNDLNKRYKR VNDILGKGTA CRVVENQTLL DSMELTPKTK EEVRKLLNSK HLFFREMCAY 240 HNTCRHSTGN NGGGGAHPSP DTAAEPPSHL QQHQHQQQQQ QQRCFHATES AAAAATVGAD 300 GDDEDEDDEE EESEEDEDDE EEEIEGTSRG HEEEDETESR KRARKGGIAV AAMQQLNAEV 360 IGVLQDGGRS PWEKKQWMKS RLIQLEEQQV NYQSQAFELE KQRLKWLKFR SKKERDMERA 420 KLENEKRRLE TERMVLMVKQ KELDWMDMHH YQQQQHSSNK RGDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MESDSLGSDG GGGGGGGGGM FSGLNSAMLG LDLPLHPHPT NPPNSHQLHH ASMVSYAPQK  60
PQLQQQPPPT AVRYPYPAKP KPQQSNLSDD EEQGFAVEDG NSDGKKKISP WQRMKWTDMM  120
VRLLITAVFY IGDEGGTEQA DHAGKKKPVG LLQKKGKWKS VSRAMMEKGF YVSPQQCEDK  180
FNDLNKRYKR VNDILGKGTA CRVVENQTLL DSMELTPKTK EEVRKLLNSK HLFFREMCAY  240
HNTCRHSTGN NGGGGAHPSP DTAAEPPSHL QQHQHQQQQQ QQRCFHATES AAAAATVGAD  300
GDDEDEDDEE EESEEDEDDE EEEIEGTSRG HEEEDETESR KRARKGGIAV AAMQQLNAEV  360
IGVLQDGGRS PWEKKQWMKS RLIQLEEQQV NYQSQAFELE KQRLKWLKFR SKKERDMERA  420
KLENEKRRLE TERMVLMVKQ KELDWMDMHH YQQQQHSSNK RGDPSSITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-105	Trihelix family protein