PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934023.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 900aa MW: 99885.9 Da PI: 8.917

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934023.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57	4.9e-18	807	889	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e + Li++r +++ r++ +k +++lWee+s m g++rsp qCk+ w +l ++y++ ++ek ++++py+++++a XP_022934023.1 807 KWKPEEMKRLIKLRGQLHARFQVAKGRMALWEEISTCMLGDGMNRSPGQCKSMWASLVQKYEQDSKREKTI----KKSWPYLEEMDA 889 7**********************************************************9999999875....456*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence
MQLEFLGGSS VLRSPHLGPY RHTMAAFGAL SLCPCSPLPR PRTIYCYSGT PKVLGNNVSR 60 VHRKRPGRLE GARKSMEDSV KRKMEQFYEG SDGPPLRVLP IGGLGEIGMN CMLVGNYDRY 120 ILIDAGVMFP DHDELGVQKI IPDTTFIRRW SHKIEAVVIT HGHEDHIGAL PWVIPALDSH 180 TPIYASSFTV ELIKKRLKEN GIFVPSRLKV FKMRKRFTAG PFEIEPIRVT HSIPDCCGLV 240 LRCADGTILH TGDWKIDESP LDGKVFDRET LEELSKEGVT LMMSDSTNVL SPGRTISESV 300 VADALLRRIS AAKGRVITTQ FASNIHRLGS VKAAADLTGR KLVFVGMSLR TYLEAAWKDG 360 KAPIDPSTLV KVEDIEAYAP KDLLIVTTGS QAEPRAALNL ASYGSSHSLK LSKEDMILYS 420 AKVIPGNESR VMKMLNRISE IGSNIIMGKN ELLHTSGHAY RGELEEILQI VKPQHFLPIH 480 GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV LSNGFTSLGK ENLQLKYSDG 540 DKAFGSSSEL FVDERLKIAT DGIIVVSMEI LRPQSIDGLN ETVIKGKLRI TTRCLWLDKG 600 KLLDALHKAA HAALSSCPVN CPLAHMERTV SELLKKMVRK YSGKRPEVIV LAVENPGGVL 660 SEQLGRRLSG KSDTRFGMSA LRKAVVGQPT KCHLNGIRPD GNDDLHSEDN SSQESQGYYI 720 EPGSLLPEED YNSSNSNLTE TQSSDTEDME DFWTPFITPS SPVNELVKEN EGSVQPSKNT 780 LEISNGLKTS NSSEKPLRPL KPVKSNKWKP EEMKRLIKLR GQLHARFQVA KGRMALWEEI 840 STCMLGDGMN RSPGQCKSMW ASLVQKYEQD SKREKTIKKS WPYLEEMDAI LSDSEAVASK

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence

MQLEFLGGSS VLRSPHLGPY RHTMAAFGAL SLCPCSPLPR PRTIYCYSGT PKVLGNNVSR  60
VHRKRPGRLE GARKSMEDSV KRKMEQFYEG SDGPPLRVLP IGGLGEIGMN CMLVGNYDRY  120
ILIDAGVMFP DHDELGVQKI IPDTTFIRRW SHKIEAVVIT HGHEDHIGAL PWVIPALDSH  180
TPIYASSFTV ELIKKRLKEN GIFVPSRLKV FKMRKRFTAG PFEIEPIRVT HSIPDCCGLV  240
LRCADGTILH TGDWKIDESP LDGKVFDRET LEELSKEGVT LMMSDSTNVL SPGRTISESV  300
VADALLRRIS AAKGRVITTQ FASNIHRLGS VKAAADLTGR KLVFVGMSLR TYLEAAWKDG  360
KAPIDPSTLV KVEDIEAYAP KDLLIVTTGS QAEPRAALNL ASYGSSHSLK LSKEDMILYS  420
AKVIPGNESR VMKMLNRISE IGSNIIMGKN ELLHTSGHAY RGELEEILQI VKPQHFLPIH  480
GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV LSNGFTSLGK ENLQLKYSDG  540
DKAFGSSSEL FVDERLKIAT DGIIVVSMEI LRPQSIDGLN ETVIKGKLRI TTRCLWLDKG  600
KLLDALHKAA HAALSSCPVN CPLAHMERTV SELLKKMVRK YSGKRPEVIV LAVENPGGVL  660
SEQLGRRLSG KSDTRFGMSA LRKAVVGQPT KCHLNGIRPD GNDDLHSEDN SSQESQGYYI  720
EPGSLLPEED YNSSNSNLTE TQSSDTEDME DFWTPFITPS SPVNELVKEN EGSVQPSKNT  780
LEISNGLKTS NSSEKPLRPL KPVKSNKWKP EEMKRLIKLR GQLHARFQVA KGRMALWEEI  840
STCMLGDGMN RSPGQCKSMW ASLVQKYEQD SKREKTIKKS WPYLEEMDAI LSDSEAVASK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein