PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934056.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 295aa MW: 31311.2 Da PI: 9.2659

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934056.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.3	2.6e-08	100	125	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + t Ck+Gd+C+FaHg+ XP_022934056.1 100 KTRMCNKYNSTEGCKFGDKCHFAHGE 125 89**********************96 PP
2	zf-CCCH	31.7	2.6e-10	262	286	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + G C +G+rC+FaHg XP_022934056.1 262 YKTKLCDNFGK-GSCTFGERCHFAHG 286 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MDYRKREKPE VGLNANGGFK KSKQEMEYLS TGVASKSKPC TKFYSTTGCQ FGEGCHFLHY 60 VPGGYNAVAQ MMNLEPAPSA PRNMAAPHPM SNGSTTQDAK TRMCNKYNST EGCKFGDKCH 120 FAHGEWELGR PSAPSHEDPR ATGYFPSRLP SRMNAAPAGP AASFGASATA KISVDASLAG 180 AIIGKGGVNS KQICRQTGAK LSIRDHESDP NLRNIELEGT FDQIKEASAM VRELIATVSM 240 AGPSKAATRT TGGPAAPAGS NYKTKLCDNF GKGSCTFGER CHFAHGSAEL RKSGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-56	C3H family protein