PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934102.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 524aa MW: 59267.2 Da PI: 6.7638

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934102.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92	6.1e-29	112	197	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e+ ++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_022934102.1 112 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMaEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 197 8***********************************889*************************97..66678*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MEMDDQYALS DLRHLMTTPP SRSHFPSSSS IPHHDLFSSS STSSAAAAAA FRHHHHHHHT 60 PYDLIMMMPR DTLPDFRSDS AATPPAVVSA PTAPTAFELE TASLAADCAT PRWPRQETLT 120 LLDIRSRLDS KFKEANQKGP LWDEVSRIMA EEHNYQRSGK KCREKFENLY KYYKKTKEGK 180 AGRQDGKNYR FFRQLEALYG ETTNSAQLPD SHFVGDSNLS FQQNGTNNPN TALPMSYEAQ 240 QKHYCDSLSL SNTSEFETSA SSDDNDDLGS VGIMDNDSVE KRRKRRGGKC WKAKIKQFID 300 SQMRKLIDKQ EAWLEKLMKT LEQKEKDRMI REEEWRRQEV SRMDRERSFW AKERAWIEAR 360 DAALMEALQR LTGRELRDYN SSPDHGLIAP ERHRNNSDNQ NEDGSEILNN NTGRELVDNN 420 NYQRKTIDEG NKKRKENSRS ATTYNLYFQT DSSLYSGGGP CGGGAEIKEQ SPNSSNAGGG 480 GGGGGGSHVV QDSCFRFLMG EGDQSQSGLW ENFGLKLNNG SDQS

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MEMDDQYALS DLRHLMTTPP SRSHFPSSSS IPHHDLFSSS STSSAAAAAA FRHHHHHHHT  60
PYDLIMMMPR DTLPDFRSDS AATPPAVVSA PTAPTAFELE TASLAADCAT PRWPRQETLT  120
LLDIRSRLDS KFKEANQKGP LWDEVSRIMA EEHNYQRSGK KCREKFENLY KYYKKTKEGK  180
AGRQDGKNYR FFRQLEALYG ETTNSAQLPD SHFVGDSNLS FQQNGTNNPN TALPMSYEAQ  240
QKHYCDSLSL SNTSEFETSA SSDDNDDLGS VGIMDNDSVE KRRKRRGGKC WKAKIKQFID  300
SQMRKLIDKQ EAWLEKLMKT LEQKEKDRMI REEEWRRQEV SRMDRERSFW AKERAWIEAR  360
DAALMEALQR LTGRELRDYN SSPDHGLIAP ERHRNNSDNQ NEDGSEILNN NTGRELVDNN  420
NYQRKTIDEG NKKRKENSRS ATTYNLYFQT DSSLYSGGGP CGGGAEIKEQ SPNSSNAGGG  480
GGGGGGSHVV QDSCFRFLMG EGDQSQSGLW ENFGLKLNNG SDQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	309	KRRKRRGGKCWKAKIKQFIDSQMRKLIDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-98	Trihelix family protein