PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934114.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 539aa MW: 58691.6 Da PI: 5.3465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934114.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	345	387	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L XP_022934114.1 345 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 387 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MLPKSTGILW LDGDHHDGAS WNRTNNHNND DIAVAGSASS FKSMLQSDWY MNSTTPLNPS 60 NQDFHSLSSH PDVRDLPFNS NPPDNLLLRP IDSSSACSAS QAFALDPSHS QSMLPPQKSC 120 FPSLYNVACS SNFENGFDLG GENGLLGSYQ GNQVSNSSGM MGFNGISSLP QIGNQELSLN 180 NAEFPVADNP PAFGAGFNPT DAFESFDGCG NALFQNRSKA LRPPESFPQV GGTQPTLFQK 240 RAAHRVGSSG VDKLENLEVS GSKFGDGSMW MPNMERLMKN SDEDIEDDSL DISRLNYDSD 300 EANEYNKLED NVNAKNSGSN SNANTTVTDG NQKGKRKGMP AKNLMAERRR RKKLNDRLYM 360 LRSVVPKISK MDRASILGDA IDYLKELLQK INELHNELES TPPPPPPPGS SLQPPASFHP 420 LTPTLPIPML PNLPCRVKEE LCPSSMSSPK AQPARVEVRA REGRAVNIHM FCSRKPGLLL 480 STMKALDNLG LDIQQAVISC FNGFALDVFR AEQSKEGEEV SPEQIKAVLL DSAGLHGVV

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MLPKSTGILW LDGDHHDGAS WNRTNNHNND DIAVAGSASS FKSMLQSDWY MNSTTPLNPS  60
NQDFHSLSSH PDVRDLPFNS NPPDNLLLRP IDSSSACSAS QAFALDPSHS QSMLPPQKSC  120
FPSLYNVACS SNFENGFDLG GENGLLGSYQ GNQVSNSSGM MGFNGISSLP QIGNQELSLN  180
NAEFPVADNP PAFGAGFNPT DAFESFDGCG NALFQNRSKA LRPPESFPQV GGTQPTLFQK  240
RAAHRVGSSG VDKLENLEVS GSKFGDGSMW MPNMERLMKN SDEDIEDDSL DISRLNYDSD  300
EANEYNKLED NVNAKNSGSN SNANTTVTDG NQKGKRKGMP AKNLMAERRR RKKLNDRLYM  360
LRSVVPKISK MDRASILGDA IDYLKELLQK INELHNELES TPPPPPPPGS SLQPPASFHP  420
LTPTLPIPML PNLPCRVKEE LCPSSMSSPK AQPARVEVRA REGRAVNIHM FCSRKPGLLL  480
STMKALDNLG LDIQQAVISC FNGFALDVFR AEQSKEGEEV SPEQIKAVLL DSAGLHGVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	353	KRKGMPAKNLMAERRRRKK
2	347	354	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-107	bHLH family protein