PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934261.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 725aa MW: 79660.5 Da PI: 7.0263

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934261.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.7e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022934261.1 302 PCPDFRK-GACRHGDMCEYAHG 322 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MCGGPEKSNS ASTTSARLSN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KSMMESNLFS 60 LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL 120 HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDCPVDVIF VHPKLQKQNT RFRLEELLNN 180 HSSGSLDVSC LHLSIKTPDS DSPLLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQTM SPSSNGVCHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSQPRI LNDLNCFSQP 480 CPTPVSVSRS GWTQTLTPNN LEELFSSEIS SSPRFSDPAA NVFSPTRKST MLNQFQQQQQ 540 NMLSPINTSI MSPKNVDHHL LQASYGVSSP GRMSPRNTEP HSPMGSRFSA FVQREKHNLR 600 TLSSRELGSN VPSSLIGSPI NSLPKWGSPK GKVDWSVGKN ELGQQMRRSS SFEMGNNGEE 660 PDLSWVQTLV KESPPEMLKE KLAVPGRGGA ASGEGLTTTK PQLESTDHSV IGAWLEQMQL 720 DQLVV

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MCGGPEKSNS ASTTSARLSN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KSMMESNLFS  60
LNKSGLWYVR QKGSKQVVNE HRTPLMVAAT YGCVDVLKLI LSYPEVDVNL SSGTDKSTAL  120
HCATSSGSVN AVDIVDLLLS AGADPKTKDV NGDCPVDVIF VHPKLQKQNT RFRLEELLNN  180
HSSGSLDVSC LHLSIKTPDS DSPLLSSSLE DEFRSTPKSI SSPKFTDGFA NSTKEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRHGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP  360
LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQTM SPSSNGVCHS  420
SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFNSQPRI LNDLNCFSQP  480
CPTPVSVSRS GWTQTLTPNN LEELFSSEIS SSPRFSDPAA NVFSPTRKST MLNQFQQQQQ  540
NMLSPINTSI MSPKNVDHHL LQASYGVSSP GRMSPRNTEP HSPMGSRFSA FVQREKHNLR  600
TLSSRELGSN VPSSLIGSPI NSLPKWGSPK GKVDWSVGKN ELGQQMRRSS SFEMGNNGEE  660
PDLSWVQTLV KESPPEMLKE KLAVPGRGGA ASGEGLTTTK PQLESTDHSV IGAWLEQMQL  720
DQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein