PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934287.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 336aa MW: 36530 Da PI: 6.3166

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934287.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.7e-18	177	231	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_022934287.1 177 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 231 778899***********************************************98 PP
2	HD-ZIP_I/II	127	8.2e-41	177	267	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk XP_022934287.1 177 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELR-ALK 267 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MELGLSLGDA PISNKPFGFL SNGVSKLSSS SSSSLMALGF CVGLAHDSAS GSGSGSPSGS 60 VHDDDDEEED DNHDRTMVLS GSDPPVQLDL LPSAPVPRSS HLRFPWLSDH LIPEGEERVA 120 LDVNRRPAVA AAEETEDRAA VTAALSSPNS TVSSFQMDFG VRASSRISDD EENGSARKKL 180 RLSKDQSAFL EESFKEHSTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE 240 YLRRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATATPAASVA 300 TKTTVTVATT APNPAALCLA NKARILPFPH LHQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	234	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-73	HD-ZIP family protein