PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934582.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

M-type_MADS

Protein Properties

Length: 458aa MW: 51602.1 Da PI: 3.84

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934582.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.4	1.1e-19	10	56	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i+n r +tf kR++ ++KKA+ELS+LCd++ +v+i+s+ ++ +++ XP_022934582.1 10 LISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASE--EFETWP 56 699************************************97..566776 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MGRGTLSLKL ISNPKSRRTT FQKRKKSLMK KAYELSTLCD VQTCVVIASE EFETWPSDRT 60 QVEAMIRSYK SQSFCKQSAK SSYDLNQFFS DRKNKIVTET SKLREKVQKS KDTNSDHCLD 120 SLSEHQLKAL MATLDSKIGV ADSMIEFMEA DYDYLIEGAV EISSIDKQIF SPLETEASPE 180 LNISELGMEA NYDYLIEGDT EILSVDTQTL SPFETELSTE FDVSEMFMES NYDPLIKGDA 240 KIVSIDTQKT FSPFETEASP EFDVSEMLME ANNNHLIEGA AEIVSIDTQT FSPLETEAST 300 EFDVSEMFME SNYDPLIEGA AEIVSIDTQT FSPFETDVSP EFDVSEMFME ANNDHLIEGA 360 AEIVSIDTQT SHPLETESSP ELNFSETFME AIYDDMIEEP TEIPTLNSLE TEVFSELDIS 420 ELLAGSGEFE FNVEGFQSLL EDEDHQTLAE NHSFIFQS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MGRGTLSLKL ISNPKSRRTT FQKRKKSLMK KAYELSTLCD VQTCVVIASE EFETWPSDRT  60
QVEAMIRSYK SQSFCKQSAK SSYDLNQFFS DRKNKIVTET SKLREKVQKS KDTNSDHCLD  120
SLSEHQLKAL MATLDSKIGV ADSMIEFMEA DYDYLIEGAV EISSIDKQIF SPLETEASPE  180
LNISELGMEA NYDYLIEGDT EILSVDTQTL SPFETELSTE FDVSEMFMES NYDPLIKGDA  240
KIVSIDTQKT FSPFETEASP EFDVSEMLME ANNNHLIEGA AEIVSIDTQT FSPLETEAST  300
EFDVSEMFME SNYDPLIEGA AEIVSIDTQT FSPFETDVSP EFDVSEMFME ANNDHLIEGA  360
AEIVSIDTQT SHPLETESSP ELNFSETFME AIYDDMIEEP TEIPTLNSLE TEVFSELDIS  420
ELLAGSGEFE FNVEGFQSLL EDEDHQTLAE NHSFIFQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	4e-19	M-type_MADS family protein