PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934686.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 462aa MW: 52478.5 Da PI: 5.885

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934686.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.7	1.7e-24	107	206	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li+a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++++++++ + XP_022934686.1 107 KWTDMMVRLLITAVFYIGDEGGSEPmdhaskkkpvgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENHTL 201 7************99999998655556678889999******************************************55******* PP trihelix 82 fdqle 86 ++++e XP_022934686.1 202 LESME 206 *9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MEPNSLGGGG GASGGMFPGI SSSMLGLELP LHQNPSNPHQ LHHPPMVSYV PHEAHHQQQP 60 PPAAVKCPYP AKPKPQQSNV SDEEEQGLAD DSNSDAKKKI SPWQRMKWTD MMVRLLITAV 120 FYIGDEGGSE PMDHASKKKP VGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY 180 KRVNDILGKG TACRVVENHT LLESMELTPK VKEEVRKLLN SKHLFFREMC AYHNTCRHGA 240 GNSSGGGANT SPEAGTEPSH LPQQQQQQRC FHATETAPAA TAGEGSKSGD EEEEDEDEDD 300 ETEEDDEEVE EEEIDGSSKV QEEEEETESK KRGRKEGFTS GIQQMCAEVM GVVQDGGRSP 360 WEKKQWMKRR LIQLEEQQVE YQSQGLEIEK QRLKWLKFRR KKERDMERAK LENEKRRLEN 420 ERMMLMVKQK ELDLTDLHNY QQQQQQQQHS SNRRGDPSSI TG

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MEPNSLGGGG GASGGMFPGI SSSMLGLELP LHQNPSNPHQ LHHPPMVSYV PHEAHHQQQP  60
PPAAVKCPYP AKPKPQQSNV SDEEEQGLAD DSNSDAKKKI SPWQRMKWTD MMVRLLITAV  120
FYIGDEGGSE PMDHASKKKP VGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY  180
KRVNDILGKG TACRVVENHT LLESMELTPK VKEEVRKLLN SKHLFFREMC AYHNTCRHGA  240
GNSSGGGANT SPEAGTEPSH LPQQQQQQRC FHATETAPAA TAGEGSKSGD EEEEDEDEDD  300
ETEEDDEEVE EEEIDGSSKV QEEEEETESK KRGRKEGFTS GIQQMCAEVM GVVQDGGRSP  360
WEKKQWMKRR LIQLEEQQVE YQSQGLEIEK QRLKWLKFRR KKERDMERAK LENEKRRLEN  420
ERMMLMVKQK ELDLTDLHNY QQQQQQQQHS SNRRGDPSSI TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	402	KQRLKWLKFRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-95	Trihelix family protein