PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022935042.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 317aa    MW: 35259.9 Da    PI: 4.3483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022935042.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWTteEd++l++++   G g+W++ ++  g+ R++k+c++rw +yl
   XP_022935042.1 14 KGRWTTEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.74.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +E++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
   XP_022935042.1  67 RGNITSQEEDVIIKLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MGRRPCCEKV GLKKGRWTTE EDDRLKKYIL ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TSQEEDVIIK LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIKTFR  120
GRNDDVPVIV DEAKLSLLQR RKGGRGRRSK AEVEAEVEVE VAREILPMPD LERESSVCGG  180
VDDITEERES PNEETVDDPA EGRHDVGGGS VSLDFNDDVF EEDDMSLDLS ELLTNVDVEW  240
NDDTAGTCES NTATVAVVDA GTAEMELVGE CSSVSSSFSL DSPWNWESFA GGHEWDAVEF  300
DAGDAAEPDA VISWLLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.16e-69MYB family protein