PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022935115.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 545aa    MW: 59685.4 Da    PI: 5.4203
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022935115.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.99.5e-1181745321374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+ Ll+cA+avs+++l+la+a+L++++ l+  +  +++++a +f++AL  r++r     +  l+p + s ++ +++l  +  f+e +P+lkf+h
  XP_022935115.1 174 LVHSLLACADAVSKNNLNLAEAILKHIKILVDVQTGAVRKVAGFFAQALTYRIYR-----FYPLKPFDCS-SSYTDQL--QIHFYESCPYLKFAH 260
                     689****************************************************.....4455555554.2233333..335************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIle++  +  vH+iDf+++qGlQWp+L+qaLa Rp+gpp + +Tg++sp     + l++ g +La+fAe++gv+fef+ +++k++ dle
  XP_022935115.1 261 FTANQAILESIGLSGSVHVIDFNLQQGLQWPPLIQALALRPGGPPAFYLTGISSP---PGDGLQKAGTKLANFAEKFGVKFEFRGFYCKNFGDLE 352
                     ******************************************************5...69*********************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L+++  E++a+n++++lhrll+ ++++++     L ++k l+Pk++++veq a+hn++sF+erf+eal+yys+lfd+le+  +  s + +  
  XP_022935115.1 353 PFMLDLE-AETVAINSIFELHRLLAYPGAIQK----ALTTIKALNPKIITLVEQVANHNGPSFMERFTEALHYYSSLFDALEEASAVGSLDVVRS 442
                     ****996.6***************99999999....*********************************************88866777666666 PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+  lgr+i+nvv ceg++r+erhet+++W +r++++GF+ ++l+++a kqa++ll+  ++  +gy+vee++gsl+lgW++rpL+++SaW+
  XP_022935115.1 443 EEY-LGRQICNVVGCEGTDRVERHETVAQWLSRMQSSGFEMIHLGSNAFKQANTLLSAlFHgRNGYKVEENNGSLTLGWHTRPLIATSAWT 532
                     655.**************************************************997526689***************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MKQDNTHQSP NPAAAETEKL AVGDQDEDKL LAALGYNVRS SDMSDVALKI EQLEMVMGLS  60
EHDGISHLSS NTIHYNPSDM SSWIETMIEE LNNPVHAGDE SIPAIATTAA FTDDSEYDLR  120
VIPGIAAFPQ LNSTSTRQRY KNSDCESVLV KAPSFSEPSR SVVLVDSAET GVHLVHSLLA  180
CADAVSKNNL NLAEAILKHI KILVDVQTGA VRKVAGFFAQ ALTYRIYRFY PLKPFDCSSS  240
YTDQLQIHFY ESCPYLKFAH FTANQAILES IGLSGSVHVI DFNLQQGLQW PPLIQALALR  300
PGGPPAFYLT GISSPPGDGL QKAGTKLANF AEKFGVKFEF RGFYCKNFGD LEPFMLDLEA  360
ETVAINSIFE LHRLLAYPGA IQKALTTIKA LNPKIITLVE QVANHNGPSF MERFTEALHY  420
YSSLFDALEE ASAVGSLDVV RSEEYLGRQI CNVVGCEGTD RVERHETVAQ WLSRMQSSGF  480
EMIHLGSNAF KQANTLLSAL FHGRNGYKVE ENNGSLTLGW HTRPLIATSA WTVPVASGSG  540
TGGPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein