PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022935813.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 572aa MW: 62026.6 Da PI: 7.1058

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022935813.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.7	1.5e-16	374	420	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRR+riN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_022935813.1 374 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 420 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MPFGPFLTRS IAFAVEFSPF TEKSRTGSLP FSSFLSIQTR ISSELFCVKA AAAMNYCFPD 60 WNFEGDLPSA SHKKSMGHEH DDLVELLWRN GQVVLQSQKA RKPSLIQKQS QPLDRTNISS 120 GISSTLIQDD ETVSWIHDPL NDDSFDKEFC SEFFSELPQT RFGAFDAAAA TTQNSKPPAV 180 LAELPTNTMP PPRYQCSDSI RQTKDLGDLG KMVNFSRVPV AVRGDLGSSN GGREAGNLIH 240 GEGKDCSATT VGSSHCGSNQ VPNPEPNVSR VSTSGVGNAG LSVDLSNKKM AAQGERGKTE 300 TMDPTATSSS GGSGSSMDRS RTIGQSNGGN GNKRKGRDGE ESECQSETAE LESAEGNKAA 360 PRSGFPRRTR AAEVHNLSER RRRERINEKM KALQELIPHC NKTDKASMLD EAIEYLKSLQ 420 LQLQVMWMGN GMAPMMFPGV QHYMSRMAMG MGMAQPSMPS MPSIHNSMQL PRVSAVDQSV 480 SATPTPNQPT ICQPQLFNPV NYQNQMSNPA LQEQYARLMG FHHMQPSSQP INVFRFCPST 540 VLQSQTPAAT GPASGPTFGG SIANDIVNGT LG

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MPFGPFLTRS IAFAVEFSPF TEKSRTGSLP FSSFLSIQTR ISSELFCVKA AAAMNYCFPD  60
WNFEGDLPSA SHKKSMGHEH DDLVELLWRN GQVVLQSQKA RKPSLIQKQS QPLDRTNISS  120
GISSTLIQDD ETVSWIHDPL NDDSFDKEFC SEFFSELPQT RFGAFDAAAA TTQNSKPPAV  180
LAELPTNTMP PPRYQCSDSI RQTKDLGDLG KMVNFSRVPV AVRGDLGSSN GGREAGNLIH  240
GEGKDCSATT VGSSHCGSNQ VPNPEPNVSR VSTSGVGNAG LSVDLSNKKM AAQGERGKTE  300
TMDPTATSSS GGSGSSMDRS RTIGQSNGGN GNKRKGRDGE ESECQSETAE LESAEGNKAA  360
PRSGFPRRTR AAEVHNLSER RRRERINEKM KALQELIPHC NKTDKASMLD EAIEYLKSLQ  420
LQLQVMWMGN GMAPMMFPGV QHYMSRMAMG MGMAQPSMPS MPSIHNSMQL PRVSAVDQSV  480
SATPTPNQPT ICQPQLFNPV NYQNQMSNPA LQEQYARLMG FHHMQPSSQP INVFRFCPST  540
VLQSQTPAAT GPASGPTFGG SIANDIVNGT LG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	384	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	6e-63	bHLH family protein