PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936158.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 1069aa MW: 118103 Da PI: 8.5051

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936158.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh lsefD++krsCrrrLa+hn rrrk+q+ XP_022936158.1 152 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQP 229 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1069 aa Download sequence
MDDVGAQVAP PIFIRQTLTS RYTDVPSIPK KRALSYQLPN FHHHLQPQGQ LHAHTWNPKA 60 WDWDSARFLT KPSKPPLLHS DTPSSDLKTT HDFAAATPST LNNTVEALEN QDESLRLNLG 120 GGLNLNYVEE PPSKPPKKVR PASPGAATTY PMCQVDNCKE DLSNAKDYHR RHKVCELHSK 180 SSKALVAKQM QRFCQQCSRF HPLSEFDDGK RSCRRRLAGH NWRRRKTQPE DVSSRPTRPG 240 SRGPQSSGNL DIVSLLTALA KAQGKNEDQT VKSLLSANSD HLIQILNKIN SLPLPADLAA 300 KLPNLESFRG KAPPQGSLQH QNILNGNSSS PSTMDLLTVL SATLAASAPD ALAVLSQKSS 360 LSSDSEKTRS SCPSGSDLHN RPLELPSVAG ERSSTSYQSP MEDSDGQVQG TRVGLALQLF 420 SSSPEHDTPP NLAASRKYFS SDSSNPIEER SPSSSPPLLQ KLFPMQSREE ANSNGKLPIR 480 KEVSGVEVRK PPSSNIPFEL FRELDGAGPN SFRPVPYQAG YTSSGSDHSP SSLNSDAQDR 540 TGRISFKLFD KDPSQFPGAL RTQIYNWLSN CPSEMESYIR PGCVVLSVYL SMTPIAWEQL 600 EENLVLHLKS LIHSEEIDFW RSGRFLVYTG RLLASHKDGK IRLNKSSKAW SNPELISVSP 660 LAVVGGQKTS FLLRGRNLKS PGTRIHCTSM GGYISEEVMG FCRQGIYDEI HSRSFKVGDA 720 SPTDLGRCFI EVENGFRGNS FPVIIADAAI CKELRHLESE IDGFRVPEIS SESHSYVTSQ 780 PRPKDEILLF LNELGWLFQR ERSSSGLDNP DILIRRFKFV LTFSAERDFC ALVKTLLDIL 840 VKKCLITHGL STKSLEMISE IQLLNRSVKR RCRRMVDLLV HYHVSGFGDA EKKYLFPPNS 900 IGPGGITPLH LAASMTDADD IVDALTNDPL EIGLECWSSQ LDANGQSPGA YALMRGNHSC 960 NELVERKLGD RKNGQVSLRI GNEIEQLEVS SGERGRAQVR SCSRCAIVAA KCNRRVPGSG 1020 THRLLHRPYI HSMLAIAAVC VCVCLFLRGS PDIGLVAPFK WENLDYGTI

Sequence ? help Back to Top

Protein Sequence Length: 1069 aa Download sequence

MDDVGAQVAP PIFIRQTLTS RYTDVPSIPK KRALSYQLPN FHHHLQPQGQ LHAHTWNPKA  60
WDWDSARFLT KPSKPPLLHS DTPSSDLKTT HDFAAATPST LNNTVEALEN QDESLRLNLG  120
GGLNLNYVEE PPSKPPKKVR PASPGAATTY PMCQVDNCKE DLSNAKDYHR RHKVCELHSK  180
SSKALVAKQM QRFCQQCSRF HPLSEFDDGK RSCRRRLAGH NWRRRKTQPE DVSSRPTRPG  240
SRGPQSSGNL DIVSLLTALA KAQGKNEDQT VKSLLSANSD HLIQILNKIN SLPLPADLAA  300
KLPNLESFRG KAPPQGSLQH QNILNGNSSS PSTMDLLTVL SATLAASAPD ALAVLSQKSS  360
LSSDSEKTRS SCPSGSDLHN RPLELPSVAG ERSSTSYQSP MEDSDGQVQG TRVGLALQLF  420
SSSPEHDTPP NLAASRKYFS SDSSNPIEER SPSSSPPLLQ KLFPMQSREE ANSNGKLPIR  480
KEVSGVEVRK PPSSNIPFEL FRELDGAGPN SFRPVPYQAG YTSSGSDHSP SSLNSDAQDR  540
TGRISFKLFD KDPSQFPGAL RTQIYNWLSN CPSEMESYIR PGCVVLSVYL SMTPIAWEQL  600
EENLVLHLKS LIHSEEIDFW RSGRFLVYTG RLLASHKDGK IRLNKSSKAW SNPELISVSP  660
LAVVGGQKTS FLLRGRNLKS PGTRIHCTSM GGYISEEVMG FCRQGIYDEI HSRSFKVGDA  720
SPTDLGRCFI EVENGFRGNS FPVIIADAAI CKELRHLESE IDGFRVPEIS SESHSYVTSQ  780
PRPKDEILLF LNELGWLFQR ERSSSGLDNP DILIRRFKFV LTFSAERDFC ALVKTLLDIL  840
VKKCLITHGL STKSLEMISE IQLLNRSVKR RCRRMVDLLV HYHVSGFGDA EKKYLFPPNS  900
IGPGGITPLH LAASMTDADD IVDALTNDPL EIGLECWSSQ LDANGQSPGA YALMRGNHSC  960
NELVERKLGD RKNGQVSLRI GNEIEQLEVS SGERGRAQVR SCSRCAIVAA KCNRRVPGSG  1020
THRLLHRPYI HSMLAIAAVC VCVCLFLRGS PDIGLVAPFK WENLDYGTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein