PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022936488.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24989.6 Da    PI: 9.2808
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022936488.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngi+KKA+E+ vLCda+v++++f+s+gk++ey+s
  XP_022936488.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVVFASSGKMHEYCS 59
                    79***********************************************96 PP
2K-box881.8e-2971168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k+sgk+l++ak+e+l++e++++kke++n+q e+R+l Ged++sL++keL+ Le++Le++l+ +R+k++el++++  + +++e+e+++ n +L 
  XP_022936488.1  71 YHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRRLRGEDITSLNYKELMALEEALENGLTGVREKQSELMKMMRTNERMMEEENKRLNYELY 165
                     8999******************************************************************************************9 PP

           K-box  96 kkl 98 
                     +k 
  XP_022936488.1 166 QKE 168
                     996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AQVSLVVFAS SGKMHEYCSP  60
STPLIDILDK YHKQSGKRLW DAKHENLSNE MDRVKKENDN MQIELRRLRG EDITSLNYKE  120
LMALEEALEN GLTGVREKQS ELMKMMRTNE RMMEEENKRL NYELYQKEMV AMGDSVREMD  180
NGYNQRMRDF NSQMPFAFRV QPIQPNLQER NN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-82MIKC_MADS family protein