PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936538.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 478aa MW: 52089.2 Da PI: 8.2264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936538.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	319	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_022936538.1 319 SHSLAERIRREKISKRMKFLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 366 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MEKEFFMNDG SSFYGMDSSV LFNSNWENSM DQSDLFESTL SSIVSSPANS HAGAVIGGGS 60 GGGDNLMMRE LIGRLGSICS SGEISPHSYI GGTNNNSTNT SCYNTPLNSP PMKGNLSVGH 120 HQNLAPFSAD PGLAERVARF SCFGNKNLAV NGQLCSNETQ ELSNKSMAGA GVESGKLSRV 180 SSNKSFNVSG IGSQMGVQKG NSMANKKVMN RFSRSSTPEN DDSREGSSVS EQITAGELGF 240 KVNTRKRKSA HTGEAKNVKA AGENHEPNGK KIKPEMDAAK GKAEAKDATQ KQNNDNSKPP 300 EPPKDYIHVR AKRGQATDSH SLAERIRREK ISKRMKFLQD LVPGCNKITG KAVMLDEIIN 360 YVQSLQHQVE FLSMKLATVN PRMDFNMETL LPKDIFKGSS SLPHTIYPID SSVPTFAYEY 420 QSMNIPPLHS DQTQGGYHKM GNGIQISKFW EDELHSVVQM GYVQTQLQNP HGEMKSEL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MEKEFFMNDG SSFYGMDSSV LFNSNWENSM DQSDLFESTL SSIVSSPANS HAGAVIGGGS  60
GGGDNLMMRE LIGRLGSICS SGEISPHSYI GGTNNNSTNT SCYNTPLNSP PMKGNLSVGH  120
HQNLAPFSAD PGLAERVARF SCFGNKNLAV NGQLCSNETQ ELSNKSMAGA GVESGKLSRV  180
SSNKSFNVSG IGSQMGVQKG NSMANKKVMN RFSRSSTPEN DDSREGSSVS EQITAGELGF  240
KVNTRKRKSA HTGEAKNVKA AGENHEPNGK KIKPEMDAAK GKAEAKDATQ KQNNDNSKPP  300
EPPKDYIHVR AKRGQATDSH SLAERIRREK ISKRMKFLQD LVPGCNKITG KAVMLDEIIN  360
YVQSLQHQVE FLSMKLATVN PRMDFNMETL LPKDIFKGSS SLPHTIYPID SSVPTFAYEY  420
QSMNIPPLHS DQTQGGYHKM GNGIQISKFW EDELHSVVQM GYVQTQLQNP HGEMKSEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	249	TRKRKS
2	245	273	RKRKSAHTGEAKNVKAAGENHEPNGKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-82	bHLH family protein