PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936541.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HB-other

Protein Properties

Length: 346aa MW: 39479.3 Da PI: 4.4976

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936541.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.4	1.2e-08	280	326	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++k q+ +Le+++++++ p+ +++ + + ++L+ +++ WF +R XP_022936541.1 280 RLKKVQVGTLERVYRRTKRPTNAMISSIVQVTNLPRKRIVKWFEDKR 326 57889**************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MALSAPVKAP EALLGSPSIS GRVSFFFRRQ FPSNLSLLRL PPVRHTLSIT FARRRNQNSS 60 VGPSSSSSKK KKRNSFPKKT RDEADEEEDA LELLFSQLEE DLKNDKLTLD DDDDDGEEDE 120 LSEEDLAKLE RELGLALGID IDEEEEEEEE EENEEEEAEE DLVDTEEEEM PVKLKNWQLR 180 RLAMALKKGR RKTSIKSLAA ELCLDRAIVL DLLREPPPRL LMLSASLPDP PTPSNPETRT 240 LQATREEEEE EPVEVDTAEE AEEVKVPVHV MQQSWAAQKR LKKVQVGTLE RVYRRTKRPT 300 NAMISSIVQV TNLPRKRIVK WFEDKRGEDG VPDQRLPYDR SAPKSA

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MALSAPVKAP EALLGSPSIS GRVSFFFRRQ FPSNLSLLRL PPVRHTLSIT FARRRNQNSS  60
VGPSSSSSKK KKRNSFPKKT RDEADEEEDA LELLFSQLEE DLKNDKLTLD DDDDDGEEDE  120
LSEEDLAKLE RELGLALGID IDEEEEEEEE EENEEEEAEE DLVDTEEEEM PVKLKNWQLR  180
RLAMALKKGR RKTSIKSLAA ELCLDRAIVL DLLREPPPRL LMLSASLPDP PTPSNPETRT  240
LQATREEEEE EPVEVDTAEE AEEVKVPVHV MQQSWAAQKR LKKVQVGTLE RVYRRTKRPT  300
NAMISSIVQV TNLPRKRIVK WFEDKRGEDG VPDQRLPYDR SAPKSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	73	RRRNQNSSVGPSSSSSKKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	3e-54	HB-other family protein