PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936546.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 428aa MW: 46867.6 Da PI: 8.5749

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936546.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	269	316	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_022936546.1 269 SHSLAERIRREKISKRMKFLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 316 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEKEFFMNDG SSFYGMDSSV LFNSNWENSM DQSDLFESTL SSIVSSPANS HAGAVIGGGS 60 GGGDNLMMRE LIGRLGSICS SGLAERVARF SCFGNKNLAV NGQLCSNETQ ELSNKSMAGA 120 GVESGKLSRV SSNKSFNVSG IGSQMGVQKG NSMANKKVMN RFSRSSTPEN DDSREGSSVS 180 EQITAGELGF KVNTRKRKSA HTGEAKNVKA AGENHEPNGK KIKPEMDAAK GKAEAKDATQ 240 KQNNDNSKPP EPPKDYIHVR AKRGQATDSH SLAERIRREK ISKRMKFLQD LVPGCNKITG 300 KAVMLDEIIN YVQSLQHQVE FLSMKLATVN PRMDFNMETL LPKDIFKGSS SLPHTIYPID 360 SSVPTFAYEY QSMNIPPLHS DQTQGGYHKM GNGIQISKFW EDELHSVVQM GYVQTQLQNP 420 HGEMKSEL

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEKEFFMNDG SSFYGMDSSV LFNSNWENSM DQSDLFESTL SSIVSSPANS HAGAVIGGGS  60
GGGDNLMMRE LIGRLGSICS SGLAERVARF SCFGNKNLAV NGQLCSNETQ ELSNKSMAGA  120
GVESGKLSRV SSNKSFNVSG IGSQMGVQKG NSMANKKVMN RFSRSSTPEN DDSREGSSVS  180
EQITAGELGF KVNTRKRKSA HTGEAKNVKA AGENHEPNGK KIKPEMDAAK GKAEAKDATQ  240
KQNNDNSKPP EPPKDYIHVR AKRGQATDSH SLAERIRREK ISKRMKFLQD LVPGCNKITG  300
KAVMLDEIIN YVQSLQHQVE FLSMKLATVN PRMDFNMETL LPKDIFKGSS SLPHTIYPID  360
SSVPTFAYEY QSMNIPPLHS DQTQGGYHKM GNGIQISKFW EDELHSVVQM GYVQTQLQNP  420
HGEMKSEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	199	TRKRKS
2	195	223	RKRKSAHTGEAKNVKAAGENHEPNGKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-74	bHLH family protein