PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022936643.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 913aa    MW: 100605 Da    PI: 5.1421
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022936643.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   +++
  XP_022936643.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  XP_022936643.1 240 KSQLLIGVRRA 250
                     7778****997 PP
2Auxin_resp111.67.9e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k +  +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_022936643.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*******************************9877*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    
MSSVEDKLKT PMGLVNNTPQ TNLLDEMKLL KQMQDQTGAR KAINSELWHA CAGPLVSLPH  60
VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQSITLHAD KDSDEIYAQM  120
SLQPVNSERD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK  240
SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVF GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLAGETDWE SLVKRPMLRV  420
PENIRGDLSY AAPNLCSEPL MKMLLRPQLV SLHGATLHQD SANNLVKIQD MKDMQPETNS  480
KMKQLIPTET ASPGNQNPTQ SDPINPNSSP KESLPGKVHT SAAAESEPPT GADDVSTNQS  540
NTLPPVGDCV GEKPTAKEVN MQTLVNQLSF MNQNQIPMQS WPLQPQLESL IQHPQPIDMP  600
QPEFTLDGDG CLINPSCLPL PGVMISPGNL SMLALQESST VFPEALNFPL PSTGQDMWDP  660
LNNIRFSSNL NCMGNANVMR AVSDESNNQS GIYSCSNLEI SNGGNTLVDP AVSSTILDDY  720
CTLKDADFPH PSDCLVGNFS SSQDVQSQIT SAASLGDSQA FSRQDFHDNS GGTSSCNVDF  780
DEGSLLHNGS WNQVVPPMRT YTKVQKAGSV GRSIDVTSFK NYDELCSAIE CMFGLEGLLN  840
DPRGSGWKLV YVDYENDVLL IGDDPWEEFV SCVRCIRILS PSEVKQMSEE GMKLLNSAMM  900
QGINCSMPEG GRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein