PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022936644.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 912aa    MW: 100534 Da    PI: 5.1421
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022936644.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   +++
  XP_022936644.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  XP_022936644.1 240 KSQLLIGVRRA 250
                     7778****997 PP
2Auxin_resp111.67.8e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k +  +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_022936644.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*******************************9877*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    
MSSVEDKLKT PMGLVNNTPQ TNLLDEMKLL KQMQDQTGAR KAINSELWHA CAGPLVSLPH  60
VGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVQSITLHAD KDSDEIYAQM  120
SLQPVNSERD VFLVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK  240
SQLLIGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVF GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWEIET PESLFIFPSL TSGLKRPLHG GFLGETDWES LVKRPMLRVP  420
ENIRGDLSYA APNLCSEPLM KMLLRPQLVS LHGATLHQDS ANNLVKIQDM KDMQPETNSK  480
MKQLIPTETA SPGNQNPTQS DPINPNSSPK ESLPGKVHTS AAAESEPPTG ADDVSTNQSN  540
TLPPVGDCVG EKPTAKEVNM QTLVNQLSFM NQNQIPMQSW PLQPQLESLI QHPQPIDMPQ  600
PEFTLDGDGC LINPSCLPLP GVMISPGNLS MLALQESSTV FPEALNFPLP STGQDMWDPL  660
NNIRFSSNLN CMGNANVMRA VSDESNNQSG IYSCSNLEIS NGGNTLVDPA VSSTILDDYC  720
TLKDADFPHP SDCLVGNFSS SQDVQSQITS AASLGDSQAF SRQDFHDNSG GTSSCNVDFD  780
EGSLLHNGSW NQVVPPMRTY TKVQKAGSVG RSIDVTSFKN YDELCSAIEC MFGLEGLLND  840
PRGSGWKLVY VDYENDVLLI GDDPWEEFVS CVRCIRILSP SEVKQMSEEG MKLLNSAMMQ  900
GINCSMPEGG RG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein