PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936778.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 1113aa MW: 123864 Da PI: 8.9456

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936778.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.7e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ +E e++++a +++G++ Wk++a+ + +R+ +++ XP_022936778.1 46 QWSRDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6***************99.*****.98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1113 aa Download sequence
MAPSRKSRSV NKRLSSANEA SSSKYVEAPS KGKQKKRKFA DLLGPQWSRD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLMRCQR 120 DSESEQESNE DSGATRKPQK RLRGKSRNNN SKGLDAHFGD ASQSQSLPTN YGCLSLLKKR 180 RSGIKPHAVG KRTPRVPVSY SYDKDSRERI FSPSRHTSKL KVDDPNDDDV AHEIALVLTE 240 ASQRDGSPQL SQTPNPKIEG HVLSPIRNDR MRSESDMMST KFRCSEMDEG GCELSLGSTG 300 ADNADYDQGK NTREIQRKGK RYYGKKAEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL 360 ETEDFDVKSV RTSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDTT ADTEPSAKVK 420 EENLDVMDKS KMKGNHSVVG AGTSASKTSK TGKASGNNVG PIPEAEGIQG SNNGNRKRKQ 480 KSSPFKISSK DEDSNDSRVN DTPKTKATDD GKSSFGKVKR SPHNAGLAKS SKISKPLDHH 540 SSSSTDHKRE DGDYALSTTQ VPSINPISLP TKMRSRRKMD LLKSQRDSKI ADNILIDQLN 600 VTAHSLDDRP HDLKEQHSNC LSWHKLRRWC VFEWLYSAID FPWFAKCEFV EYLNHVGLGH 660 IPRLTRVEWG VIRSSLGRPR RFSAQFLKEE KQKLNQYRES VRKHYAELRA GTREGLPTDL 720 ARPLSVGQRV IAIHPKTREI HDGSVLTVDY SRCRVQFDRP ELGVEFVMDI ECMPLNPVEN 780 MPANLSRHGV TLDKIFGNLN EVKINGLLKE AKIEDYIKST SNDKLESTDG SVFISPSTHH 840 INKLIKQAKE VVVSELKRLN DEVLENQING DNLLKDSENF KKQYAAVLLQ LNEVNEQVSS 900 ALYSLRQRNT YQGTSPLMFL KPVHDLGDPC SHAQEPGSHV AEIVGSSRAK AQTMIDEAMQ 960 AILALKKRES NLENIEEAID FVSNKLSVDD LALPTVKSTS ADTSNATPVP QNHFNVGASN 1020 PSAANDIVGS KSNSPSDKPE VEIPSELIAH CVATLLMIQK CTERQFPPAD VAQVLDSAVN 1080 SLQPCCPQNL PLYAEIQKCM GIIRSQILAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1113 aa Download sequence

MAPSRKSRSV NKRLSSANEA SSSKYVEAPS KGKQKKRKFA DLLGPQWSRD EVEQFYEAYR  60
KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLMRCQR  120
DSESEQESNE DSGATRKPQK RLRGKSRNNN SKGLDAHFGD ASQSQSLPTN YGCLSLLKKR  180
RSGIKPHAVG KRTPRVPVSY SYDKDSRERI FSPSRHTSKL KVDDPNDDDV AHEIALVLTE  240
ASQRDGSPQL SQTPNPKIEG HVLSPIRNDR MRSESDMMST KFRCSEMDEG GCELSLGSTG  300
ADNADYDQGK NTREIQRKGK RYYGKKAEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL  360
ETEDFDVKSV RTSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDTT ADTEPSAKVK  420
EENLDVMDKS KMKGNHSVVG AGTSASKTSK TGKASGNNVG PIPEAEGIQG SNNGNRKRKQ  480
KSSPFKISSK DEDSNDSRVN DTPKTKATDD GKSSFGKVKR SPHNAGLAKS SKISKPLDHH  540
SSSSTDHKRE DGDYALSTTQ VPSINPISLP TKMRSRRKMD LLKSQRDSKI ADNILIDQLN  600
VTAHSLDDRP HDLKEQHSNC LSWHKLRRWC VFEWLYSAID FPWFAKCEFV EYLNHVGLGH  660
IPRLTRVEWG VIRSSLGRPR RFSAQFLKEE KQKLNQYRES VRKHYAELRA GTREGLPTDL  720
ARPLSVGQRV IAIHPKTREI HDGSVLTVDY SRCRVQFDRP ELGVEFVMDI ECMPLNPVEN  780
MPANLSRHGV TLDKIFGNLN EVKINGLLKE AKIEDYIKST SNDKLESTDG SVFISPSTHH  840
INKLIKQAKE VVVSELKRLN DEVLENQING DNLLKDSENF KKQYAAVLLQ LNEVNEQVSS  900
ALYSLRQRNT YQGTSPLMFL KPVHDLGDPC SHAQEPGSHV AEIVGSSRAK AQTMIDEAMQ  960
AILALKKRES NLENIEEAID FVSNKLSVDD LALPTVKSTS ADTSNATPVP QNHFNVGASN  1020
PSAANDIVGS KSNSPSDKPE VEIPSELIAH CVATLLMIQK CTERQFPPAD VAQVLDSAVN  1080
SLQPCCPQNL PLYAEIQKCM GIIRSQILAL IPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	476	506	RKRKQKSSPFKISSKDEDSNDSRVNDTPKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein