PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937093.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 468aa MW: 53616.5 Da PI: 8.7699

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937093.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.9	1.2e-27	47	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r++ k+plW+evs+k+re gf+r+pk+Ckek+en+ k++k++ke ++++++++++ +++ d+le XP_022937093.1 47 RWPRQETLALLKIRSDMGVAFRDATHKAPLWDEVSRKLRELGFNRTPKKCKEKFENVYKYHKRTKEARSGKSNNTKKIYRFSDELE 132 8*********************************************************************9999999999999997 PP
2	trihelix	98.7	5.1e-31	320	405	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi++r++me +++++ +k+ Wee+s +mr g++rs+k+Ckekwen+nk++kk+k+++kkr +e+ +tcpy++ql+a XP_022937093.1 320 RWPKEEIEALIRVRTRMEMKYEENGAKGLVWEEISTAMRGFGYNRSSKRCKEKWENINKYFKKVKDSNKKR-PEDAKTCPYYHQLDA 405 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MEVDSGEAVV AAAAEAVETH EEVSGGGGGG GSNSGEEEKG LSFGGNRWPR QETLALLKIR 60 SDMGVAFRDA THKAPLWDEV SRKLRELGFN RTPKKCKEKF ENVYKYHKRT KEARSGKSNN 120 TKKIYRFSDE LEAFNHISFQ SHHRQVAATP SHYDQPGKIT TDTIISTMNN SLPPKPSNPL 180 SNFPNMAVNV MFSSSTSSST ASEEDPFRSR RRRKKRKWSD FFLRLTKEVI EKQEGLQLKF 240 LEALERIENQ RKLRDEAWRI KEMKRVNQEH EVLVQEMSMA AAKDAAVVAL LQKISPFPSP 300 PPPPPPPPTR PQDGEIRPSR WPKEEIEALI RVRTRMEMKY EENGAKGLVW EEISTAMRGF 360 GYNRSSKRCK EKWENINKYF KKVKDSNKKR PEDAKTCPYY HQLDAIYKEK EKGMSFDINS 420 QMEPLMVEPE QQWPPPFQVN QIMGNQEEEE GEEEESSCTE GLQSSISI

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MEVDSGEAVV AAAAEAVETH EEVSGGGGGG GSNSGEEEKG LSFGGNRWPR QETLALLKIR  60
SDMGVAFRDA THKAPLWDEV SRKLRELGFN RTPKKCKEKF ENVYKYHKRT KEARSGKSNN  120
TKKIYRFSDE LEAFNHISFQ SHHRQVAATP SHYDQPGKIT TDTIISTMNN SLPPKPSNPL  180
SNFPNMAVNV MFSSSTSSST ASEEDPFRSR RRRKKRKWSD FFLRLTKEVI EKQEGLQLKF  240
LEALERIENQ RKLRDEAWRI KEMKRVNQEH EVLVQEMSMA AAKDAAVVAL LQKISPFPSP  300
PPPPPPPPTR PQDGEIRPSR WPKEEIEALI RVRTRMEMKY EENGAKGLVW EEISTAMRGF  360
GYNRSSKRCK EKWENINKYF KKVKDSNKKR PEDAKTCPYY HQLDAIYKEK EKGMSFDINS  420
QMEPLMVEPE QQWPPPFQVN QIMGNQEEEE GEEEESSCTE GLQSSISI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	216	RRRRKKR
2	211	216	RRRKKR
3	211	217	RRRKKRK
4	211	217	RRRRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-61	Trihelix family protein