PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937429.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 481aa MW: 51827 Da PI: 8.3631

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937429.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.2e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_022937429.1 49 EADCIYYLRTGFCGYGSRCRFNHPR 73 789********************96 PP
2	zf-CCCH	40	6.6e-13	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtG Ck+G++Ck++H++ XP_022937429.1 95 QPLCQYYMRTGMCKFGASCKYHHPQ 119 79*********************97 PP
3	zf-CCCH	35.8	1.3e-11	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ XP_022937429.1 140 GEKECSYYLKNGQCKFGATCKFHHPE 165 6789********************96 PP
4	zf-CCCH	38.9	1.5e-12	304	330	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p XP_022937429.1 304 PGQPECQYYMRTGDCKFGSSCRYHHPP 330 5789*********************97 PP
5	zf-CCCH	35.5	1.7e-11	352	376	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G+Ck+G+ CkF H++ XP_022937429.1 352 APPCTHFMQRGICKFGPACKFDHSM 376 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MKPYGQSMEG SQSDPSPEWT ASGPDTGHGE PVWPLGSRER ESYPERPEEA DCIYYLRTGF 60 CGYGSRCRFN HPRERSAVLG GSRTGGRDYP ERVGQPLCQY YMRTGMCKFG ASCKYHHPQQ 120 EMGSLSPVSL NFYGYPLRQG EKECSYYLKN GQCKFGATCK FHHPEPAGLQ FPAPSPVQVA 180 PLPAPMPPAP SVYPPVQSPS AHSSQQYGVI LARSPMLSSP YVPSPYGPML VSPGVVQFPS 240 WNPYQAPMSP VASPSAQPSV GSGQLYGMAQ VSPSAPTYAG SYQPMPSAGA SSTSQKEHSF 300 PERPGQPECQ YYMRTGDCKF GSSCRYHHPP ELVNSRSSVV LSQIGLPLRP GAPPCTHFMQ 360 RGICKFGPAC KFDHSMERLS YSPSASSLAD MPVAPYPVGS VVGTLAPSFS SSELRPEHFS 420 GPRMDSNPSR MSSSMSTSSG LAGSTTSRTE MHSHSNVQRS SQSSGLSASS TSSTTSVEGR 480 T

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MKPYGQSMEG SQSDPSPEWT ASGPDTGHGE PVWPLGSRER ESYPERPEEA DCIYYLRTGF  60
CGYGSRCRFN HPRERSAVLG GSRTGGRDYP ERVGQPLCQY YMRTGMCKFG ASCKYHHPQQ  120
EMGSLSPVSL NFYGYPLRQG EKECSYYLKN GQCKFGATCK FHHPEPAGLQ FPAPSPVQVA  180
PLPAPMPPAP SVYPPVQSPS AHSSQQYGVI LARSPMLSSP YVPSPYGPML VSPGVVQFPS  240
WNPYQAPMSP VASPSAQPSV GSGQLYGMAQ VSPSAPTYAG SYQPMPSAGA SSTSQKEHSF  300
PERPGQPECQ YYMRTGDCKF GSSCRYHHPP ELVNSRSSVV LSQIGLPLRP GAPPCTHFMQ  360
RGICKFGPAC KFDHSMERLS YSPSASSLAD MPVAPYPVGS VVGTLAPSFS SSELRPEHFS  420
GPRMDSNPSR MSSSMSTSSG LAGSTTSRTE MHSHSNVQRS SQSSGLSASS TSSTTSVEGR  480
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-133	C3H family protein