PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937523.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1085aa MW: 120483 Da PI: 6.447

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937523.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.4e-22	126	226	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ XP_022937523.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEK 217 99***************************9545444.38**********************************************4..466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_022937523.1 218 SQLLLGIRH 226 667888875 PP
2	Auxin_resp	124.3	8.4e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_022937523.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1085 aa Download sequence
MKAPPNGFVP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE 60 TDFIPNYPNL PSKLVCMLHN VILHADPETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRVFAGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSVIS 240 SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYTKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPSRVS IWEVEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGMKDTPSSI FPGLSLVQWM 420 SMQHNSQFPA AQSGILPSMV APSALHGTLT NDDPSKLLCF QAPVMSSSNL QFSKANQQNQ 480 VGQLPATSWS QQQQLQQLPP QPELRQQQQQ PKQSQQQQQT SQSALPNNGV GGANHLSNQS 540 LQQPLVYSQL QQQQQQLLAG NVQSHQTSQP SNKNSIETTS LLQETQFQPQ IDQQPTLVSK 600 HHQQTQFQQA PLQLLQQSLS QRTQQQPQVQ QFSQPIIPSE QQLQWQLLQK LQQQQQQQQQ 660 QQPLVSPASP LFPPQMIQPH PVHQQNQQLP PLPLSNQPQF NTSGGSFQTE KHNSNGFSSL 720 GLMQSQQVPI TQSHNQFKPT TAIRGYSGLT DGDAPSCSTS PSTNNCQVSV SNLLNKNQQG 780 AATLGGDLVV EPATNLPQEL PSKPDLRNKP EFPNSKGLDQ LKYKGTVPDQ VEASSSGTSY 840 CLDAGTIQQT FPLPTCLDND VQSHPQTNIP FSNSIDGWAP DTLLSRGYDS QKDLQNLLSN 900 YEGGVPRDIE TELSTAAIRS QSFGVPNLPF KPGCSNDVNV NEAGALSSGL WANHSQRMRT 960 YTKVQKRGSV GRCIDVTRYK GYDELRHDLA RMFGIEGQLE DPQRTDWKLV YVDHENDILL 1020 VGDDPWEEFV SCVQSIKILS SSEVQQMSLN GNLGHIQAPN QACSGTDSGN AWRGQYDDNS 1080 AASFN

Sequence ? help Back to Top

Protein Sequence Length: 1085 aa Download sequence

MKAPPNGFVP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE  60
TDFIPNYPNL PSKLVCMLHN VILHADPETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRVFAGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSVIS  240
SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYTKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPSRVS IWEVEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGMKDTPSSI FPGLSLVQWM  420
SMQHNSQFPA AQSGILPSMV APSALHGTLT NDDPSKLLCF QAPVMSSSNL QFSKANQQNQ  480
VGQLPATSWS QQQQLQQLPP QPELRQQQQQ PKQSQQQQQT SQSALPNNGV GGANHLSNQS  540
LQQPLVYSQL QQQQQQLLAG NVQSHQTSQP SNKNSIETTS LLQETQFQPQ IDQQPTLVSK  600
HHQQTQFQQA PLQLLQQSLS QRTQQQPQVQ QFSQPIIPSE QQLQWQLLQK LQQQQQQQQQ  660
QQPLVSPASP LFPPQMIQPH PVHQQNQQLP PLPLSNQPQF NTSGGSFQTE KHNSNGFSSL  720
GLMQSQQVPI TQSHNQFKPT TAIRGYSGLT DGDAPSCSTS PSTNNCQVSV SNLLNKNQQG  780
AATLGGDLVV EPATNLPQEL PSKPDLRNKP EFPNSKGLDQ LKYKGTVPDQ VEASSSGTSY  840
CLDAGTIQQT FPLPTCLDND VQSHPQTNIP FSNSIDGWAP DTLLSRGYDS QKDLQNLLSN  900
YEGGVPRDIE TELSTAAIRS QSFGVPNLPF KPGCSNDVNV NEAGALSSGL WANHSQRMRT  960
YTKVQKRGSV GRCIDVTRYK GYDELRHDLA RMFGIEGQLE DPQRTDWKLV YVDHENDILL  1020
VGDDPWEEFV SCVQSIKILS SSEVQQMSLN GNLGHIQAPN QACSGTDSGN AWRGQYDDNS  1080
AASFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein