PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937525.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 927aa MW: 103147 Da PI: 6.5485

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937525.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.8	1.3e-15	6	68	34	98
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ +l+++++ XP_022937525.1 6 QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEKSQLLLGIRH 68 48999*********************************************4..466667888875 PP
2	Auxin_resp	124.6	6.8e-41	94	176	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_022937525.1 94 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 176 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence
MQPPAQELVA RDLHDNSWTF RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS 60 QLLLGIRHAN RQQPALSSSV ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP 120 LAKYTKAMYT QVSLGMRFRM MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD 180 ESAAGERPSR VSIWEVEPVV TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG 240 DDFGMKDTPS SIFPGLSLVQ WMSMQHNSQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL 300 CFQAPVMSSS NLQFSKANQQ NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQPKQSQQQQ 360 QTSQSALPNN GVGGANHLSN QSLQQPLVYS QLQQQQQQLL AGNVQSHQTS QPSNKNSIET 420 TSLLQETQFQ PQIDQQPTLV SKHHQQTQFQ QAPLQLLQQS LSQRTQQQPQ VQQFSQPIIP 480 SEQQLQWQLL QKLQQQQQQQ QQQQPLVSPA SPLFPPQMIQ PHPVHQQNQQ LPPLPLSNQP 540 QFNTSGGSFQ TEKHNSNGFS SLGLMQSQQV PITQSHNQFK PTTAIRGYSG LTDGDAPSCS 600 TSPSTNNCQV SVSNLLNKNQ QGAATLGGDL VVEPATNLPQ ELPSKPDLRN KPEFPNSKGL 660 DQLKYKGTVP DQVEASSSGT SYCLDAGTIQ QTFPLPTCLD NDVQSHPQTN IPFSNSIDGW 720 APDTLLSRGY DSQKDLQNLL SNYEGGVPRD IETELSTAAI RSQSFGVPNL PFKPGCSNDV 780 NVNEAGALSS GLWANHSQRM RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ 840 LEDPQRTDWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSSSEVQQMS LNGNLGHIQA 900 PNQACSGTDS GNAWRGQYDD NSAASFN

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence

MQPPAQELVA RDLHDNSWTF RHIYRGQPKR HLLTTGWSVF VSTKRVFAGD SVLFIRDEKS  60
QLLLGIRHAN RQQPALSSSV ISSDSMHIGI LASAAHAAAN NSPFTIFYNP RASPSEFVIP  120
LAKYTKAMYT QVSLGMRFRM MFETEESGVR RYMGTITGIS DMDSVRWKNS QWRNLQVGWD  180
ESAAGERPSR VSIWEVEPVV TPFYICPPPF FRPKFPKQPG MPDDESDIEN AFKRAMPWFG  240
DDFGMKDTPS SIFPGLSLVQ WMSMQHNSQF PAAQSGILPS MVAPSALHGT LTNDDPSKLL  300
CFQAPVMSSS NLQFSKANQQ NQVGQLPATS WSQQQQLQQL PPQPELRQQQ QQPKQSQQQQ  360
QTSQSALPNN GVGGANHLSN QSLQQPLVYS QLQQQQQQLL AGNVQSHQTS QPSNKNSIET  420
TSLLQETQFQ PQIDQQPTLV SKHHQQTQFQ QAPLQLLQQS LSQRTQQQPQ VQQFSQPIIP  480
SEQQLQWQLL QKLQQQQQQQ QQQQPLVSPA SPLFPPQMIQ PHPVHQQNQQ LPPLPLSNQP  540
QFNTSGGSFQ TEKHNSNGFS SLGLMQSQQV PITQSHNQFK PTTAIRGYSG LTDGDAPSCS  600
TSPSTNNCQV SVSNLLNKNQ QGAATLGGDL VVEPATNLPQ ELPSKPDLRN KPEFPNSKGL  660
DQLKYKGTVP DQVEASSSGT SYCLDAGTIQ QTFPLPTCLD NDVQSHPQTN IPFSNSIDGW  720
APDTLLSRGY DSQKDLQNLL SNYEGGVPRD IETELSTAAI RSQSFGVPNL PFKPGCSNDV  780
NVNEAGALSS GLWANHSQRM RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ  840
LEDPQRTDWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSSSEVQQMS LNGNLGHIQA  900
PNQACSGTDS GNAWRGQYDD NSAASFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.2	1e-153	ARF family protein