PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937744.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1074aa MW: 118481 Da PI: 6.6759

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937744.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.4	2.4e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ a+++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022937744.1 134 FCKTLTASDTSTHGGFSVPRRAADKIfppldfSMQPPA-QELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 225 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_022937744.1 226 QQLLLGIRRA 235 889**997 PP
2	Auxin_resp	119.5	2.6e-39	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+ XP_022937744.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQ 343 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1074 aa Download sequence
MKTPANGVAS SAAAPNSCEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV 60 AASLKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS 120 DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAADKIF PPLDFSMQPP AQELVAKDLH 180 DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT 240 TLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSI 360 WEIEPVIAPF FICPPPFFRS KRPRQPGMPD DESSDLDSIF KRTMFGDDFC MKDPQGYPGL 420 NLVQWMNMQN PSLSNMQPNY MHSFSGSMLP NLGGVDISRQ LGMSNAQNPQ SNNIQFNAQR 480 LLPQAQQLDQ LPKIPSTMNS MASVVQPPQQ FDDISRQTRQ NVVSSQIQSQ IMQQPHGNGI 540 LQQQTSLQNQ QLQRSLPQNM LMQQHQQILG QNQQQNMNQP PIPDLSNHPL QMSDNQIQMQ 600 MLQKFQQQQQ SLLAQQSVLQ PAQLAQLPEQ QSFSISMSTN QTIDVPHSAP AAGPPPSAQQ 660 APKSHSSNQH LQPKFPQLQQ QPHDMSRPMG HNNQFSAATS SAITGAAGAG QSGITDDIPS 720 CSTSPSTNNC PSLVQPVTNG RLHRTTGLVD DVAQSAATIF STNTLDSISP NANLVKNIPH 780 KAAVKPSLNI SKNQSHGVLT QQTFLTGAVP QTEFLDTSSS TTSACLSQND AQLQQNNIMS 840 FNSQPMLFRD GSQDLEPPTD LHNIPYGTNV DGQLVAHLNS DPLMNKGIGG LGKDFSNNFS 900 SGDMLATYDA QKDPQQEISS SIVSQSFGIP DMTFNSMDST INDSSFLNRN QWAPPPPFQR 960 MRTFTKVYKR GAVGRSIDIT RYSGYDELKQ DLARRFGIEG QLEDRQKIGW KLVYVDHEND 1020 VLLVGDDPWE DFVNCVRSIK ILSPQEVQQM SLDGDFGNGV LPNQACSSSD GGNA

Sequence ? help Back to Top

Protein Sequence Length: 1074 aa Download sequence

MKTPANGVAS SAAAPNSCEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV  60
AASLKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAADKIF PPLDFSMQPP AQELVAKDLH  180
DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT  240
TLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSI  360
WEIEPVIAPF FICPPPFFRS KRPRQPGMPD DESSDLDSIF KRTMFGDDFC MKDPQGYPGL  420
NLVQWMNMQN PSLSNMQPNY MHSFSGSMLP NLGGVDISRQ LGMSNAQNPQ SNNIQFNAQR  480
LLPQAQQLDQ LPKIPSTMNS MASVVQPPQQ FDDISRQTRQ NVVSSQIQSQ IMQQPHGNGI  540
LQQQTSLQNQ QLQRSLPQNM LMQQHQQILG QNQQQNMNQP PIPDLSNHPL QMSDNQIQMQ  600
MLQKFQQQQQ SLLAQQSVLQ PAQLAQLPEQ QSFSISMSTN QTIDVPHSAP AAGPPPSAQQ  660
APKSHSSNQH LQPKFPQLQQ QPHDMSRPMG HNNQFSAATS SAITGAAGAG QSGITDDIPS  720
CSTSPSTNNC PSLVQPVTNG RLHRTTGLVD DVAQSAATIF STNTLDSISP NANLVKNIPH  780
KAAVKPSLNI SKNQSHGVLT QQTFLTGAVP QTEFLDTSSS TTSACLSQND AQLQQNNIMS  840
FNSQPMLFRD GSQDLEPPTD LHNIPYGTNV DGQLVAHLNS DPLMNKGIGG LGKDFSNNFS  900
SGDMLATYDA QKDPQQEISS SIVSQSFGIP DMTFNSMDST INDSSFLNRN QWAPPPPFQR  960
MRTFTKVYKR GAVGRSIDIT RYSGYDELKQ DLARRFGIEG QLEDRQKIGW KLVYVDHEND  1020
VLLVGDDPWE DFVNCVRSIK ILSPQEVQQM SLDGDFGNGV LPNQACSSSD GGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein