PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937889.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 369aa MW: 41681.4 Da PI: 7.0078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937889.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.6e-10	188	232	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++ErrRR+++N +f+ Lr+ll + +K +K ++L + eY+ +L XP_022937889.1 188 HMIAERRRREKLNGSFQALRSLLHPG-----TKKDKLSVLATTREYLTKL 232 7899****************9775.....8999999****999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDTVFSLDEA PRATFLRAIM QSFHPTYICL WSYLPHPSHC LLNLDALFRE DDANQPSSSL 60 GSFERRLFDE YKQLVFNVEN NISLVPGHAF NNNILFLELH QSLLHTHSSS QIQSHFYAAA 120 GIQSVVFMGC SNGEIELGFS EVNMVEKMRA TSPFTSMAVL KNPPPPTSWS SSSTNFLRRR 180 PGSAQLLHMI AERRRREKLN GSFQALRSLL HPGTKKDKLS VLATTREYLT KLREQVSELS 240 HKNQMLLEAQ SQGEETAKSF VNERFTVRVS HAPPSINGTE IIDLEITVRG EGSLMADIVI 300 RVLEFLKNAV NVGVILSFHS IEQISPSSLV SRLRFRFSLQ DGEWDESGFL EAVRRIVSDL 360 APTYNEKQP

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDTVFSLDEA PRATFLRAIM QSFHPTYICL WSYLPHPSHC LLNLDALFRE DDANQPSSSL  60
GSFERRLFDE YKQLVFNVEN NISLVPGHAF NNNILFLELH QSLLHTHSSS QIQSHFYAAA  120
GIQSVVFMGC SNGEIELGFS EVNMVEKMRA TSPFTSMAVL KNPPPPTSWS SSSTNFLRRR  180
PGSAQLLHMI AERRRREKLN GSFQALRSLL HPGTKKDKLS VLATTREYLT KLREQVSELS  240
HKNQMLLEAQ SQGEETAKSF VNERFTVRVS HAPPSINGTE IIDLEITVRG EGSLMADIVI  300
RVLEFLKNAV NVGVILSFHS IEQISPSSLV SRLRFRFSLQ DGEWDESGFL EAVRRIVSDL  360
APTYNEKQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	196	RRRPGSAQLLHMIAERRRR
2	192	197	ERRRRE
3	193	198	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-40	bHLH family protein