PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938113.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 587aa MW: 63016.3 Da PI: 5.9007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938113.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.5e-16	354	400	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_022938113.1 354 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 400 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MPLSELYRVA RGKNNMVSAD SSLNPENDVY ELVWENGQIL LQGQSSKARK NSCVPFHSPK 60 GTDSVIRDVL GHDDDDDDDD MVPWLNYPLD EHSSEFLLEL SGVTVNDPLS RNSTSKQVDG 120 DAQLNHLHGA RLEGGNVSKV SSMDVSSARA RSCTNQLHSS ASQQSQISLP HLSSSSTARH 180 NSSNIMNFSH FLRPAVLKSN DQNRDVTKGV GFSSMRCVGS VDKNCSAVVP SIDNSNPSGV 240 KAPETLEVVE QPEVACLGDS AKNDDHPEPC LEAGASKGLS DSEKVVESVI AASVCSRTSM 300 KRALDDTTVV RKRKCHDTED SEWHSDDVEE ESNDVNRATP VRGNGSKRSR AAEVHNLSER 360 RRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLFMPPMMFP 420 GGLPPMNAPH IYSPMGVGIG MGYGIAMPDM NGGSPGYPMA QMPHVQGTHF PSPSIPAQTV 480 MHGMPGSNFH VLGLPGQGLP LSMPHGPIAP FRGGPFMTNS SVAVAPVESF GLAAACSSKD 540 SSPKMNAPTV RNGGNDPLIT SPRQGNEQAS SVNGSGTNPT NNNETTL

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MPLSELYRVA RGKNNMVSAD SSLNPENDVY ELVWENGQIL LQGQSSKARK NSCVPFHSPK  60
GTDSVIRDVL GHDDDDDDDD MVPWLNYPLD EHSSEFLLEL SGVTVNDPLS RNSTSKQVDG  120
DAQLNHLHGA RLEGGNVSKV SSMDVSSARA RSCTNQLHSS ASQQSQISLP HLSSSSTARH  180
NSSNIMNFSH FLRPAVLKSN DQNRDVTKGV GFSSMRCVGS VDKNCSAVVP SIDNSNPSGV  240
KAPETLEVVE QPEVACLGDS AKNDDHPEPC LEAGASKGLS DSEKVVESVI AASVCSRTSM  300
KRALDDTTVV RKRKCHDTED SEWHSDDVEE ESNDVNRATP VRGNGSKRSR AAEVHNLSER  360
RRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA GLFMPPMMFP  420
GGLPPMNAPH IYSPMGVGIG MGYGIAMPDM NGGSPGYPMA QMPHVQGTHF PSPSIPAQTV  480
MHGMPGSNFH VLGLPGQGLP LSMPHGPIAP FRGGPFMTNS SVAVAPVESF GLAAACSSKD  540
SSPKMNAPTV RNGGNDPLIT SPRQGNEQAS SVNGSGTNPT NNNETTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	364	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-53	bHLH family protein