PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938418.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 448aa MW: 49736 Da PI: 7.7991

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938418.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	58	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW eE++++++a k++G + W+ I +++g ++t+ q++s+ qk+ XP_022938418.1 58 RERWKDEEHDKFIEALKLYGRD-WRQIEEHVG-TKTAVQIRSHAQKF 102 78****************77.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MGAAGIQLQN TGGGLCSNNM NSAVYESTVT PDQHSSANVQ LKEFAPKARK PYTITKQRER 60 WKDEEHDKFI EALKLYGRDW RQIEEHVGTK TAVQIRSHAQ KFFSKVTRNS NGCSTNLVGC 120 IEIPPPRPKR KPAHPYPRKE VAHSHKLSSI SEQTSSLSPQ LSEKECQSPT STVVAATSGS 180 DTLMFANSRI HHDSASPDSS VPSSLDNESP TAAAPVPENS TLHEKTSKNL ELFTKDDMHE 240 KDDSTKEPSL QSLKLFGRTV LISDPHKQTP TIETCSSKAD SKPGENQKQI SPRKSPTGNP 300 ESTWNHGAFY FIQLNNVDSN QGSGSTVPVS WWSSYGSYPL SFVHCFNQAH SNPSREVDDR 360 EAHKDQSWCG SNTGSLNSGE NDIQSSSSRV FQNRDEMIGK ALSCELISSH EKNTKGFVPY 420 KRCMTERATQ SHTVTDTERE EKRIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MGAAGIQLQN TGGGLCSNNM NSAVYESTVT PDQHSSANVQ LKEFAPKARK PYTITKQRER  60
WKDEEHDKFI EALKLYGRDW RQIEEHVGTK TAVQIRSHAQ KFFSKVTRNS NGCSTNLVGC  120
IEIPPPRPKR KPAHPYPRKE VAHSHKLSSI SEQTSSLSPQ LSEKECQSPT STVVAATSGS  180
DTLMFANSRI HHDSASPDSS VPSSLDNESP TAAAPVPENS TLHEKTSKNL ELFTKDDMHE  240
KDDSTKEPSL QSLKLFGRTV LISDPHKQTP TIETCSSKAD SKPGENQKQI SPRKSPTGNP  300
ESTWNHGAFY FIQLNNVDSN QGSGSTVPVS WWSSYGSYPL SFVHCFNQAH SNPSREVDDR  360
EAHKDQSWCG SNTGSLNSGE NDIQSSSSRV FQNRDEMIGK ALSCELISSH EKNTKGFVPY  420
KRCMTERATQ SHTVTDTERE EKRIRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-43	MYB_related family protein