PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938444.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 744aa MW: 83264.7 Da PI: 4.5464

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938444.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.6e-11	591	634	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +W++ + e++++av+q+G++ + I + ++ gRt+ q+k+++ + XP_022938444.1 591 RTKWSKHDTERFYEAVRQFGTD-FCMIQQLFP-GRTRHQIKLKFKN 634 789*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MDPFDEILSD PGFTSRTGGR FQPKIKPRPK KQTLAPQLST VSQDKKGTTS DAKSCHDGRG 60 NTKSIKSSSQ LPVIEENKES EDDLLLATVR SDFIGCSHHT SVESAIMVDS TQLDLDSCGG 120 ILPSGSTIDG PVGVENPTDD SKNSGILNYS HSSASRAHEA TVLGQSGLGS IQPEDGHSND 180 GKIAGQNTDV FDELEWLDDF HNQPKNEADP SSLKQATISN EDGDLDTQRL EVEECGAGAN 240 ITRDIISSGT TTPSEQPACK YIPKPKMRVA GDSCTQISQP EISNTLPPSP QVISCDTRCM 300 HEASIGTHSD GVLNDSSINF DDYSPVNQHI EAPVNVESLA YDSYGDILVD DFNSDDQDEM 360 LREEGGKNGE EDPLSQSNMS QQQEMFPPVG EEIDHSKTSR KLRQQVSHQL DDPEDGVDDF 420 PSERFSNYDI HGDGYKKNGR RGTKTKTKSL KPSSDNEKPA RKRKEANKAV PDLQAEKRPK 480 KFSHSTRRNR RQVNKVLLET PEDEIDFQKI SFRDLIIYHE HKEKLEKKEA TTRQPATNQR 540 TDTVGEEIYN DGEESLADEQ GRGTDDDETP DVVDMTSAYF NYHSFMDKTS RTKWSKHDTE 600 RFYEAVRQFG TDFCMIQQLF PGRTRHQIKL KFKNEERHHP FRLSDAITNR AKDHSQFLSL 660 IGQLQEAANK AKHESNEDEL TENSGDEELG ELAPETNEEE VAKPGEVEDT KMEEFVGEIH 720 SPLKADGSDD DDPHRWDEYK FDYW

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MDPFDEILSD PGFTSRTGGR FQPKIKPRPK KQTLAPQLST VSQDKKGTTS DAKSCHDGRG  60
NTKSIKSSSQ LPVIEENKES EDDLLLATVR SDFIGCSHHT SVESAIMVDS TQLDLDSCGG  120
ILPSGSTIDG PVGVENPTDD SKNSGILNYS HSSASRAHEA TVLGQSGLGS IQPEDGHSND  180
GKIAGQNTDV FDELEWLDDF HNQPKNEADP SSLKQATISN EDGDLDTQRL EVEECGAGAN  240
ITRDIISSGT TTPSEQPACK YIPKPKMRVA GDSCTQISQP EISNTLPPSP QVISCDTRCM  300
HEASIGTHSD GVLNDSSINF DDYSPVNQHI EAPVNVESLA YDSYGDILVD DFNSDDQDEM  360
LREEGGKNGE EDPLSQSNMS QQQEMFPPVG EEIDHSKTSR KLRQQVSHQL DDPEDGVDDF  420
PSERFSNYDI HGDGYKKNGR RGTKTKTKSL KPSSDNEKPA RKRKEANKAV PDLQAEKRPK  480
KFSHSTRRNR RQVNKVLLET PEDEIDFQKI SFRDLIIYHE HKEKLEKKEA TTRQPATNQR  540
TDTVGEEIYN DGEESLADEQ GRGTDDDETP DVVDMTSAYF NYHSFMDKTS RTKWSKHDTE  600
RFYEAVRQFG TDFCMIQQLF PGRTRHQIKL KFKNEERHHP FRLSDAITNR AKDHSQFLSL  660
IGQLQEAANK AKHESNEDEL TENSGDEELG ELAPETNEEE VAKPGEVEDT KMEEFVGEIH  720
SPLKADGSDD DDPHRWDEYK FDYW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-36	MYB_related family protein