PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022938457.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 843aa    MW: 93878.5 Da    PI: 6.3566
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022938457.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.3e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_022938457.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_022938457.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp119.52.6e-39254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv+++ k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_022938457.1 254 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79********************************86599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MKLSTSGFGQ QDHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNK  60
EVDGHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTAQEQKD TFLPMELGIP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LTKYVKAVFH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESAAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHP GVSSVHDNRD DASNGLMWLR GGVGDQGLHS LNLQSMGSLP  420
WLQQRLDSPM FGNDHNQQYQ AMLAAGMPNL GGVDMLRQQI MHLQQPFQYI QQAGFHNSLL  480
QQQQQLVQQS MPQNILKTPS QVMAENIPQH ILQQTPQNQS EDIPNQQQRT YHETLQVQSN  540
QFHQGENSNV PSPPFPRTEL MDSNTNYSES MISRRNILAS SCAEGTGNLS NIYRSGQSIL  600
TEQLPQQSPV SKNAHPQVDA HSNSMTFPPP FSGRDSILEL GNCNSDSPSR TLFGVNIDSS  660
GLLLPSNVPT YASPSIGPDS SSMPMGDSGF QNSMYSCVQD SSELLHSSGQ VDPLNPTRTF  720
VKVYKSGSVG RSLDISRFSS YQELREELAQ MFGIEGQLVD PHRSGWQLVF VDRENDVLLL  780
GDDPWEAFVN NVWYIKILSP QDFQKLGVQA IESFNPVGGQ RLTSGGNEAE NVSGLPSVGS  840
LEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein