PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939005.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 482aa MW: 52943.2 Da PI: 5.3865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939005.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	299	347	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_022939005.1 299 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 347 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MNGKDEFEDE SRRSDPMSIT SGWQFAGAVS NEDLSVSSCP STSMSNLFTP TLLNSGFCSS 60 FNEQNSIVTR EGLDSLRSNG VDWNQQNPWM KGVFSGNVHG FPANLSQLPA DSAFIERAAR 120 FSCFNSGVFR ASPPVGPFDI ANSIGIHSRQ EVMSRNVASK DGSLPMELEA KEKSPPKNEK 180 ESEMSQARGK ESDEAGFSGG HGERCVLEGT ITEPSMDELC LRKRKRDEQN IELGQVKEAP 240 QQVNETAKNG ASNQQKGTQN PSSTTNKPAE KQGKQDSQPT DAPKEEYIHV RARRGQATNS 300 HSLAERVRRE KISERMRLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV 360 NPRLDFNIEE LLTNEIIQSK AGPSLLNFPP DMPMPYLPQH PSHLGLIPPC LPNMASSPDL 420 LRRTLNSQLT SLVGGFKEPV QIPNGWENEL HNAVPMSFDV AAPTSGQDVD GSTPQCNTRA 480 QL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MNGKDEFEDE SRRSDPMSIT SGWQFAGAVS NEDLSVSSCP STSMSNLFTP TLLNSGFCSS  60
FNEQNSIVTR EGLDSLRSNG VDWNQQNPWM KGVFSGNVHG FPANLSQLPA DSAFIERAAR  120
FSCFNSGVFR ASPPVGPFDI ANSIGIHSRQ EVMSRNVASK DGSLPMELEA KEKSPPKNEK  180
ESEMSQARGK ESDEAGFSGG HGERCVLEGT ITEPSMDELC LRKRKRDEQN IELGQVKEAP  240
QQVNETAKNG ASNQQKGTQN PSSTTNKPAE KQGKQDSQPT DAPKEEYIHV RARRGQATNS  300
HSLAERVRRE KISERMRLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV  360
NPRLDFNIEE LLTNEIIQSK AGPSLLNFPP DMPMPYLPQH PSHLGLIPPC LPNMASSPDL  420
LRRTLNSQLT SLVGGFKEPV QIPNGWENEL HNAVPMSFDV AAPTSGQDVD GSTPQCNTRA  480
QL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-82	bHLH family protein