PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939356.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 441aa MW: 50688.4 Da PI: 6.7711

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939356.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.2	1.5e-25	120	216	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li+a+++++++++++ +kk++W+ +sk+m+erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d XP_022939356.1 120 KWTDKMVKLLITAVSYIGDDINSDFdgagrrkcqiQKKGKWKLISKVMAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGtSCKVVENPALLDL 214 7************99999997522334566788********************************************56999998888877 PP trihelix 85 le 86 le XP_022939356.1 215 LE 216 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MEGNLSQGGL IPGGTSYGGL DLQGPFKVHS QAQHSHALHQ QHHPHTRQGS AANPSIQEGF 60 SLSMGVVQNC DHAMSLVDYN KGERCKNSAS DEEPSFTEDG IDGHNETSKG KKGSVWHRVK 120 WTDKMVKLLI TAVSYIGDDI NSDFDGAGRR KCQIQKKGKW KLISKVMAER GYQVSPQQCE 180 DKFNDLNKRY KRLNDIIGRG TSCKVVENPA LLDLLEYLTD KEKDDVRKIL NSKQLFYEEM 240 CSYHNSNRLH LPHDPALQRS LQLAFRARDD HDNDEPRRHQ NDDFDENEHD ETDERDDFEE 300 NFAPHGDNRR SFGVLGGSVK RLRRDQDHDD THACGKSLSS HAHSQAQFAQ ADTAHLETEG 360 MKGSTSQKQW MELRLLQLED QKLQIQVEML ELEKQKFKWE RFNKKKDREL EKMRMVNERM 420 KLENERIALD LKQKEIGSGF H

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MEGNLSQGGL IPGGTSYGGL DLQGPFKVHS QAQHSHALHQ QHHPHTRQGS AANPSIQEGF  60
SLSMGVVQNC DHAMSLVDYN KGERCKNSAS DEEPSFTEDG IDGHNETSKG KKGSVWHRVK  120
WTDKMVKLLI TAVSYIGDDI NSDFDGAGRR KCQIQKKGKW KLISKVMAER GYQVSPQQCE  180
DKFNDLNKRY KRLNDIIGRG TSCKVVENPA LLDLLEYLTD KEKDDVRKIL NSKQLFYEEM  240
CSYHNSNRLH LPHDPALQRS LQLAFRARDD HDNDEPRRHQ NDDFDENEHD ETDERDDFEE  300
NFAPHGDNRR SFGVLGGSVK RLRRDQDHDD THACGKSLSS HAHSQAQFAQ ADTAHLETEG  360
MKGSTSQKQW MELRLLQLED QKLQIQVEML ELEKQKFKWE RFNKKKDREL EKMRMVNERM  420
KLENERIALD LKQKEIGSGF H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-157	Trihelix family protein