PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022939458.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 262aa    MW: 29865.2 Da    PI: 5.3574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022939458.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W+  a++ g+ Rt+k+c++rw++yl
   XP_022939458.1 11 RGPWTIEEDTLLIHYIASHGEGHWNNLAKHAGLERTGKSCRLRWLNYL 58
                     89********************************************97 PP
2Myb_DNA-binding50.93.5e-1664107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_022939458.1  64 RGNLTPQEQLLILQLHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 107
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MEGVGRSELR RGPWTIEEDT LLIHYIASHG EGHWNNLAKH AGLERTGKSC RLRWLNYLKP  60
DIKRGNLTPQ EQLLILQLHS KWGNRWSKIA QQLPGRTDNE IKNYWRTRIQ KQAKQLNIEL  120
NSEKFLETVR HLWIPRLLQE MDQRSSSTSF NFNSPSLESF SQHLLQNPSG SSAIEANQSS  180
IQSSGVYYQW AESSESVSEE FGNNSDLQPL DNGELQVDQL QHPFSLLGAA CGVAEFDGQM  240
AAADWVLGDD VAETFWNLEN CL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-80MYB family protein