PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939461.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 400aa MW: 45688.3 Da PI: 8.0131

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939461.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	204	250	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v ++G + W+ Ia++++ gR +kqc++rw+++l XP_022939461.1 204 KGQWTPQEDRLLVQLVDEYGIKKWSQIAKMLQ-GRVGKQCRERWHNHL 250 799***************************.***********97 PP
2	Myb_DNA-binding	53.9	4.2e-17	256	298	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd +l++a+k G++ W+ Iar+++ gRt++ +k++w+ XP_022939461.1 256 KDTWSEEEDRILIEAHKDIGNK-WAEIARRLP-GRTENTIKNHWN 298 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MEFDSNFKDD LPLLSSFFSD KAESKPPLDD DDRKFSRMEL GSSPSSSKGL FHSLLDHHNH 60 NNNHFQYLHQ YFPVVTRSDS INNSNNSHYD LDHHRRRLDG SLQSLLSEMP TQCFEPKFEA 120 FSNEVPKDHI FESGAKLMHG FVGSGGVWTN FPGNFMPQFS QPPNSHLGLG LTDTIIGYDH 180 IKKRKRIQLR RENKPPKKLP NIIKGQWTPQ EDRLLVQLVD EYGIKKWSQI AKMLQGRVGK 240 QCRERWHNHL RPDIRKDTWS EEEDRILIEA HKDIGNKWAE IARRLPGRTE NTIKNHWNAT 300 KRRQNSKKLK GRDMDSNPNG SMLQNYIKSV TAGDRKISDS LPLLVDSHSP AAEEGGGFCF 360 GFGYGSGSGS GSGMECLNLT QNEEMKSEMD LLELICQGNL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MEFDSNFKDD LPLLSSFFSD KAESKPPLDD DDRKFSRMEL GSSPSSSKGL FHSLLDHHNH  60
NNNHFQYLHQ YFPVVTRSDS INNSNNSHYD LDHHRRRLDG SLQSLLSEMP TQCFEPKFEA  120
FSNEVPKDHI FESGAKLMHG FVGSGGVWTN FPGNFMPQFS QPPNSHLGLG LTDTIIGYDH  180
IKKRKRIQLR RENKPPKKLP NIIKGQWTPQ EDRLLVQLVD EYGIKKWSQI AKMLQGRVGK  240
QCRERWHNHL RPDIRKDTWS EEEDRILIEA HKDIGNKWAE IARRLPGRTE NTIKNHWNAT  300
KRRQNSKKLK GRDMDSNPNG SMLQNYIKSV TAGDRKISDS LPLLVDSHSP AAEEGGGFCF  360
GFGYGSGSGS GSGMECLNLT QNEEMKSEMD LLELICQGNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	9e-70	MYB family protein