PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939643.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 25481.2 Da PI: 10.6679

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939643.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	71	125	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +++k+q + Le+ F+ ++ ++ +++e LA+ l+L+ rqV vWFqNrRa+ k XP_022939643.1 71 KKKLSLSKHQSRLLEDIFRHSHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSK 125 788899***********************************************98 PP
2	HD-ZIP_I/II	108.8	3.9e-35	71	159	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+ lsk+q++lLE+ F++++ L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++++L+r++ +l+e+n+rL++e eeLr+ XP_022939643.1 71 KKKLSLSKHQSRLLEDIFRHSHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMECQYLRRWFGSLTEQNRRLRRELEELRA 159 5999***********************************************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MAFLPINSSS LDLSISMPGF ASSPPRPSAK ELDMNRVPDV GEAAEEERAV AARTEEEEES 60 CSIGNGGGQP KKKLSLSKHQ SRLLEDIFRH SHSLNPKQKE ALAMALQLKP RQVEVWFQNR 120 RARSKLKQTE MECQYLRRWF GSLTEQNRRL RRELEELRAT KVAVPAVVSR HSRQPPLPVS 180 TITMCPQCKR VTAATITSSP AAATQTAIAT TATPSKAVRS ALKLQQPSQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	6e-57	HD-ZIP family protein