PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939723.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 471aa MW: 52599.5 Da PI: 6.1647

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939723.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.5e-19	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede+l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_022939723.1 38 KGPWTSAEDEILIEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	53	7.7e-17	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ XP_022939723.1 91 KGAFTEEEEHLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 134 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MRHTKIEIED NIPSKDQILS PLVDEDSGGN ANGIVLKKGP WTSAEDEILI EYVKKHGEGN 60 WNAVQKHSGL SRCGKSCRLR WANHLRPNLK KGAFTEEEEH LIIELHAKMG NKWARMAAHL 120 PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPD VCLRTWQALQ QTQDTGGSNV VDKDRHDLLR 180 TNSYDIPDVM FHSLKPNNTL SYMSELPDIS SCMMKRGLDS SLCSFMPSTM HRQKRFRESA 240 SLFPSPDGSV KAPYQFEDNS YGQVTQSYGS PFPLESNPTN KNAMSFGSFE GSHSLTNGNS 300 SASQHSKETE KLELPSLQYP ETDLSSWDTP IQPSIFESVD PFIQSPPTFM LGSDCPSPRH 360 SGLLEALIYE SKTLGCPKNH PSDKNSNSYS VTPGDVTDSY NLTASKTEID DYTEAISPFG 420 HSTSSLFSEC TPISATGSSY EDPALTEAFS DTFQSSFSPR FHDGLHQMLK V

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MRHTKIEIED NIPSKDQILS PLVDEDSGGN ANGIVLKKGP WTSAEDEILI EYVKKHGEGN  60
WNAVQKHSGL SRCGKSCRLR WANHLRPNLK KGAFTEEEEH LIIELHAKMG NKWARMAAHL  120
PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPD VCLRTWQALQ QTQDTGGSNV VDKDRHDLLR  180
TNSYDIPDVM FHSLKPNNTL SYMSELPDIS SCMMKRGLDS SLCSFMPSTM HRQKRFRESA  240
SLFPSPDGSV KAPYQFEDNS YGQVTQSYGS PFPLESNPTN KNAMSFGSFE GSHSLTNGNS  300
SASQHSKETE KLELPSLQYP ETDLSSWDTP IQPSIFESVD PFIQSPPTFM LGSDCPSPRH  360
SGLLEALIYE SKTLGCPKNH PSDKNSNSYS VTPGDVTDSY NLTASKTEID DYTEAISPFG  420
HSTSSLFSEC TPISATGSSY EDPALTEAFS DTFQSSFSPR FHDGLHQMLK V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	1e-88	MYB family protein