PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939946.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 684aa MW: 75680 Da PI: 6.3336

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939946.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.4	5.8e-23	122	223	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_022939946.1 122 FAKTLTQSDANNGGGFSVPRYCAETMfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 212 89*******************999986445444..8999*****************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+++v+r+ XP_022939946.1 213 TGDLFIGVRRA 223 9999**996 PP
2	Auxin_resp	96.9	3e-32	281	364	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++Fe+vY+P ++t+eFvvk++ +++ ++v++ + mRfkm fet+dss++++ +Gt+++++ +dpvrWp+S+Wr+L+ XP_022939946.1 281 AAMLAASGKPFEIVYYPCTGTPEFVVKASCLRSVMQVHWYPAMRFKMPFETKDSSRISWfMGTISSIQVADPVRWPDSPWRMLQ 364 5778999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MKRGMDSVIE PMRNHEKYLD SQLWHACAGG LIELPTIDSK VVYFPQGHAE HAQENVDFGV 60 AQIPSLIPCR VSGIRHMADS ETDEVFANIR LIPLRNNEFS LDDDDELLGH NDIRTREKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETMFPR LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG 180 TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLFIGV RRAKRGNGYG IDYETGWDPT 240 NSASPLVGYS DFMRDNEGRL VRRISNGNSS GRVTVESVIE AAMLAASGKP FEIVYYPCTG 300 TPEFVVKASC LRSVMQVHWY PAMRFKMPFE TKDSSRISWF MGTISSIQVA DPVRWPDSPW 360 RMLQVAWDEP DLLQNVKSIN PWLVEVVVNM PAIHVSPFSP PRKKQRFHPA ETAVFGHLPM 420 PSFSTNFFET TSSLQSVTGN NIPAGIQGAR HTQFGLSSPD FQLSKLNLGP CSAGFKHLDE 480 ATPLPGTPGE NMFGGMKSPD NSHWLTMGNN TESSKDSKET KPDHIILFGQ LILPNQLISN 540 SCSADTTNAS YENQGKSSNP SDGSGLSSQQ NGSLENSSEG GSTSYNGHEK TGFSLNTGQC 600 KVFMEFEDIG RTLNLSLLRS YDELYGKLAN MFGVGSSEML NCVLYEDALG TTKQAGDEPF 660 STFLKTARKL TILTDSRSSD NSKT

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MKRGMDSVIE PMRNHEKYLD SQLWHACAGG LIELPTIDSK VVYFPQGHAE HAQENVDFGV  60
AQIPSLIPCR VSGIRHMADS ETDEVFANIR LIPLRNNEFS LDDDDELLGH NDIRTREKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETMFPR LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLFIGV RRAKRGNGYG IDYETGWDPT  240
NSASPLVGYS DFMRDNEGRL VRRISNGNSS GRVTVESVIE AAMLAASGKP FEIVYYPCTG  300
TPEFVVKASC LRSVMQVHWY PAMRFKMPFE TKDSSRISWF MGTISSIQVA DPVRWPDSPW  360
RMLQVAWDEP DLLQNVKSIN PWLVEVVVNM PAIHVSPFSP PRKKQRFHPA ETAVFGHLPM  420
PSFSTNFFET TSSLQSVTGN NIPAGIQGAR HTQFGLSSPD FQLSKLNLGP CSAGFKHLDE  480
ATPLPGTPGE NMFGGMKSPD NSHWLTMGNN TESSKDSKET KPDHIILFGQ LILPNQLISN  540
SCSADTTNAS YENQGKSSNP SDGSGLSSQQ NGSLENSSEG GSTSYNGHEK TGFSLNTGQC  600
KVFMEFEDIG RTLNLSLLRS YDELYGKLAN MFGVGSSEML NCVLYEDALG TTKQAGDEPF  660
STFLKTARKL TILTDSRSSD NSKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein