PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022940319.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 932aa    MW: 102688 Da    PI: 5.2048
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022940319.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.7e-25149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  XP_022940319.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+v+r+
  XP_022940319.1 240 KSQLLVGVRRA 250
                     7778*****97 PP
2Auxin_resp113.51.9e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  XP_022940319.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 358
                     79*********************************99*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    
MGSVDEKLKT IGGFISNAPQ PNLLDDMKLL KEMQDQTGAR KAINSELWHA CAGPLVSLPH  60
MGSLVYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLMC QVHNVTLHAD KDSDEIYAQM  120
SLQPVNSEKD VFIVPDFGLR PSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRDEK  240
SQLLVGVRRA NRQQSTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKCVY GTQLSAGMRF GMMFETEESG KRRYMGTIVG ISDLDPLRWP GSKWRNLQVE  360
WDEPGCCDKQ NRVSSWDIET PESLFIFPSL TSGLKRPLHG ETDWGSLVKR PMLRVPENVS  420
YAPTLCSEPL MKMLLRPQLV NLHGTTLQQD MMGGMQPVTN PKMQQQQVTS SSPQHQNHHQ  480
PAPSPSTDPI ISNSSPKANE PGKVQDSAAI ESEAPTGAEA DKSKYEREVS TCQSNPLPPV  540
ECGEDKLTGN EVNMQTLVNQ LSFVNQNQIP MQLQSVSSWP MQPQLESLIQ HPQPIDTPQP  600
EFPNSNGLIS SMDGDGCLIN PTCLPLSGVM RSPGNLSMLG LQESSTVFSE ALNFPIPSTG  660
QEMWDPLSNI RFSSQTNHLV SFSHPDASNL ICMANANVTR DVSDESNNQS GIYGCSNLEI  720
SNGGNTLVDP AVSSTILDDY CTLKDADFPH PSDCLAGNFS SSQDVQSQIT SASLGDSQAF  780
SRQEFHDNSG GTSSCNVDFD EGNLLQNGSW KQVVPPMRTY TKVQKAGSVG RSIDVTSFKN  840
YEELCSAIEC MFGLEGLLND PRGSGWKLVY VDYENDVLLI GDDPWEEFVS CVRCIRILSP  900
SEVQQMSEEG MKLLNSAMMQ GMNCSISEGG RA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein