PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022940655.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 1061aa MW: 117706 Da PI: 8.5294

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022940655.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	141	218	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+ hsk++++lv++l+qrfCqqCsrfh lsefD++krsCrrrLa+hn rrrk+q+ XP_022940655.1 141 MCQVDNCKEDLSNAKDYHRRHKVCQLHSKSTKALVANLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQP 218 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence
MDDLGAQVVP PVFIHQTFPT HYTGFPSTSN KRPLSYHNHL HHHSHTWNPK TWDWDTDTFL 60 IKPSDPALLH SDALSSKPHF LPATPLPSTS NNNTLHLQDD QTLRLNLGPA PNFNCVEQPL 120 SKPPKKLRPD PGSPATATYP MCQVDNCKED LSNAKDYHRR HKVCQLHSKS TKALVANLMQ 180 RFCQQCSRFH PLSEFDDGKR SCRRRLAGHN WRRRKTQPED VTSRLTPAGS RGPPSGGNLD 240 IFSLLAVLAQ AQGNNEGQSV ESLLSANSDQ LIQTLTKVNS LPLPAEFAAK VPNLENFMGK 300 ASPGSSLQHQ NKLNRNPSSS STMDLLTVLS ATLVASAPDA LAMLSQKSSP SSASEKTRSS 360 CPSGSDLQNR PLEFPSVGGE RSSTSYQSPV DESDGQVQGS RVGLPLQLFS SSPEHDTPLN 420 LTASRKYFSS DSSNPIDERS PSSSPPLLQK LFPVQRSEET TSNRKIPIRK EVSGIVEVPK 480 PPSSAMPFEL FRESDRGGGP NLLHTVPYQA GYTSSGSDHS PSNLNSDAQD RTGRISFKLF 540 DKDPSQFPGT LRTQIYNWLS NCPSEMESYI RPGCVVLSIY MSMSSIAWEQ LEENLVLHVK 600 SLVHGENLEF WRSGRFLVYS GRQLASHKDG KIRLNKSSKA WSNPELISVS PLAVVSGQKT 660 SFLLRGTNLK NPCTKIHCTF MGGYISKEVM GLSRQGTYDE IHSGNYKIGD ASSPSTLGRC 720 FIEVENGFRG NSFPVIIADS AICKELRHLE SVFDEFRVTD MSSESHSCVP SQPRLKDETL 780 QFLNELGWLF QRERSSSKLD NPIFLIRRFK YLLTFSVERD FCALLKTLLD ILVKKCLITN 840 GLSMKSLEMI SEVQLLNRAV KRRCRPMVDL LVHYYVSGFG DEEKKYLFPP NVIGPGRITP 900 MHLAASMEDS DDMVDALTND PLEIGLNCWS SQVDASGQSA RGYALMRGNH SCNELVDRKL 960 EDRKKGQVSV RVGNEIEEVG VSSSERSRVQ GRCCSRCAVV AGRCYKRVPG SGTHRLLHRP 1020 YIHSMLAIGA VCVCVCLFLR GSPDIGLVAP FKWENLRYGT I

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence

MDDLGAQVVP PVFIHQTFPT HYTGFPSTSN KRPLSYHNHL HHHSHTWNPK TWDWDTDTFL  60
IKPSDPALLH SDALSSKPHF LPATPLPSTS NNNTLHLQDD QTLRLNLGPA PNFNCVEQPL  120
SKPPKKLRPD PGSPATATYP MCQVDNCKED LSNAKDYHRR HKVCQLHSKS TKALVANLMQ  180
RFCQQCSRFH PLSEFDDGKR SCRRRLAGHN WRRRKTQPED VTSRLTPAGS RGPPSGGNLD  240
IFSLLAVLAQ AQGNNEGQSV ESLLSANSDQ LIQTLTKVNS LPLPAEFAAK VPNLENFMGK  300
ASPGSSLQHQ NKLNRNPSSS STMDLLTVLS ATLVASAPDA LAMLSQKSSP SSASEKTRSS  360
CPSGSDLQNR PLEFPSVGGE RSSTSYQSPV DESDGQVQGS RVGLPLQLFS SSPEHDTPLN  420
LTASRKYFSS DSSNPIDERS PSSSPPLLQK LFPVQRSEET TSNRKIPIRK EVSGIVEVPK  480
PPSSAMPFEL FRESDRGGGP NLLHTVPYQA GYTSSGSDHS PSNLNSDAQD RTGRISFKLF  540
DKDPSQFPGT LRTQIYNWLS NCPSEMESYI RPGCVVLSIY MSMSSIAWEQ LEENLVLHVK  600
SLVHGENLEF WRSGRFLVYS GRQLASHKDG KIRLNKSSKA WSNPELISVS PLAVVSGQKT  660
SFLLRGTNLK NPCTKIHCTF MGGYISKEVM GLSRQGTYDE IHSGNYKIGD ASSPSTLGRC  720
FIEVENGFRG NSFPVIIADS AICKELRHLE SVFDEFRVTD MSSESHSCVP SQPRLKDETL  780
QFLNELGWLF QRERSSSKLD NPIFLIRRFK YLLTFSVERD FCALLKTLLD ILVKKCLITN  840
GLSMKSLEMI SEVQLLNRAV KRRCRPMVDL LVHYYVSGFG DEEKKYLFPP NVIGPGRITP  900
MHLAASMEDS DDMVDALTND PLEIGLNCWS SQVDASGQSA RGYALMRGNH SCNELVDRKL  960
EDRKKGQVSV RVGNEIEEVG VSSSERSRVQ GRCCSRCAVV AGRCYKRVPG SGTHRLLHRP  1020
YIHSMLAIGA VCVCVCLFLR GSPDIGLVAP FKWENLRYGT I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	858	863	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein