PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022941347.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 704aa MW: 78160.2 Da PI: 5.2296

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022941347.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	9.8e-06	520	567	4	55
HHHHHHHHH.HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrR.RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + n+r r R R+ i +++ eLr+++P+ a K s + Lek+v ++ +Lq XP_022941347.1 520 TSNARQRPRdRQLIQDRIKELRQIVPNgA------KCSIVGLLEKTVMHMLYLQ 567 5677777666888************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
METSALKQLL KSLCNNSQWI YAVFWKIKYQ NPSILTWEDG YCNGSKLENH MGSMTECRMI 60 NEREEHVSSY YGTNIHNGDS GGCSVGAAVA DMFYLQYALG EGTVGSVASS GNHSWVFLEN 120 LFTSDLLSAS IYEGPTEWLL QYASGIKTIL LVPVLPFGVL QLGSLQMLTE NLSMVGYIKD 180 RVSAINSVDG NATSVASDKG VWPLCASVVP SPFGSLDDPT NVTSCMFQAE NHGAIDDVKP 240 LVSTFNQFVT NQDVPTVSRR TRPETLHSEK GHKGELEGTT MEEPFASLYQ SIRDSEVEFS 300 DLFCLEPLLA PCSQLRNNET GLFEGNPHSY HSCSVDNVVG QQFGHNLVSK KEYGSADNFF 360 SFPDDCELLE ALGSALPAHK HTNELAHDPS SSIKNTTSSL MCSSDFKEGD LEHLLEAMIT 420 ADDTLSNNTI NARISSPVVG RSGLSAKICC QSESSAVVVD DPALWIFPES KVTETGRKYL 480 TSLSTSNSLV VSAREENDCD ITKHKNGMKS SNFRRRIKVT SNARQRPRDR QLIQDRIKEL 540 RQIVPNGAKC SIVGLLEKTV MHMLYLQRVT DQAEKLKQLA QEGSNSEYST VLEHEDSQPN 600 GASWAWAFDI GSELQVCPIV VEDLEYKGHM LIKILCDDMG LFLEISQILR DLELTILKGV 660 IERHSNNSWA HFIVEAPRGF HRMDVFWPLL HLLQRKRNPV SGRI

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

METSALKQLL KSLCNNSQWI YAVFWKIKYQ NPSILTWEDG YCNGSKLENH MGSMTECRMI  60
NEREEHVSSY YGTNIHNGDS GGCSVGAAVA DMFYLQYALG EGTVGSVASS GNHSWVFLEN  120
LFTSDLLSAS IYEGPTEWLL QYASGIKTIL LVPVLPFGVL QLGSLQMLTE NLSMVGYIKD  180
RVSAINSVDG NATSVASDKG VWPLCASVVP SPFGSLDDPT NVTSCMFQAE NHGAIDDVKP  240
LVSTFNQFVT NQDVPTVSRR TRPETLHSEK GHKGELEGTT MEEPFASLYQ SIRDSEVEFS  300
DLFCLEPLLA PCSQLRNNET GLFEGNPHSY HSCSVDNVVG QQFGHNLVSK KEYGSADNFF  360
SFPDDCELLE ALGSALPAHK HTNELAHDPS SSIKNTTSSL MCSSDFKEGD LEHLLEAMIT  420
ADDTLSNNTI NARISSPVVG RSGLSAKICC QSESSAVVVD DPALWIFPES KVTETGRKYL  480
TSLSTSNSLV VSAREENDCD ITKHKNGMKS SNFRRRIKVT SNARQRPRDR QLIQDRIKEL  540
RQIVPNGAKC SIVGLLEKTV MHMLYLQRVT DQAEKLKQLA QEGSNSEYST VLEHEDSQPN  600
GASWAWAFDI GSELQVCPIV VEDLEYKGHM LIKILCDDMG LFLEISQILR DLELTILKGV  660
IERHSNNSWA HFIVEAPRGF HRMDVFWPLL HLLQRKRNPV SGRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-44	bHLH family protein