PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022941442.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 196aa MW: 23032.4 Da PI: 9.3571

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022941442.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.4	3.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda v++++f+s+gk++ey+s XP_022941442.1 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAHVSLVVFASSGKMHEYCS 59 79***********************************************96 PP
2	K-box	89	9.2e-30	71	159	1	89
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 y+k+sgk+l++ak+e+l++el+++kke++n+q e+Rhl Ged++sL++keL+ Leq+Le++l +R+k++e+++++ + qk ++++ e XP_022941442.1 71 YHKQSGKRLWDAKHENLSNELDRVKKENDNMQIELRHLRGEDITSLNYKELMALEQALENGLIGVREKQSEFMKMMRTNYQKEMEAMGE 159 8999*****************************************************************************99887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AHVSLVVFAS SGKMHEYCSP 60 SMQLVDILDK YHKQSGKRLW DAKHENLSNE LDRVKKENDN MQIELRHLRG EDITSLNYKE 120 LMALEQALEN GLIGVREKQS EFMKMMRTNY QKEMEAMGEC VREMDNGYNQ RMRDFNSQMP 180 FAFRVQPIQP NLQERI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-83	MIKC_MADS family protein