PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022941774.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27441.6 Da PI: 9.8231

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022941774.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90	1.2e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +i+fsstgkly+ys+ XP_022941774.1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGKLYDYST 59 8***********************************************96 PP
2	K-box	84.2	2.7e-28	78	171	8	99
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++ ++ + +++e+a Lk++++ Lq+ +R+l+Ge+L+ Ls+k+Lq+Le++Le slk +R K+++l+++i el++k + +++en +L kkl+ XP_022941774.1 78 QlmNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLENKLEMSLKGVRVEKEKILRDEITELRQKGNHMHQENVELYKKLD 171 234678899**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIVFSS TGKLYDYSTT 60 SIRSITDRYY KVKEEQNQLM NSVSELQFWK REAAALKQQL HYLQECHRQL MGEELSGLSV 120 KDLQNLENKL EMSLKGVRVE KEKILRDEIT ELRQKGNHMH QENVELYKKL DMIHKENAEL 180 QMKVYGPMEV DKTSSSSTQQ FTITNRYSMP ALQLRQPQPQ NSETSVPGIK LGYVLVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-87	MIKC_MADS family protein