PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022941970.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 201aa MW: 22165.5 Da PI: 9.925

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022941970.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.6	1.4e-40	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C++apyf ++p+kfa vhk+FGasnv+k+lk++p++er+++++sl+yeA++r+rdPvyG++g i+ lq+q++ l+a l XP_022941970.1 46 PCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLT 140 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++++e XP_022941970.1 141 AVRAE 145 99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MPAECPNKDG ERSEVLGKKR KRAVSSNIPP RHTLHGPPRT LNTITPCAAC KLLRRRCGQQ 60 CPFAPYFSPH EPHKFASVHK VFGASNVSKM LKEVPKNERD NTTNSLIYEA NVRLRDPVYG 120 CMGAISCLQH QVQALQATLT AVRAEILRCK YRQGNMVSIA VQPPPPPPPE LPPPPHQDAS 180 SSSSTLYNRP TVAADSSFFA F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	23	GKKRKRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-65	LBD family protein