PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942159.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 385aa MW: 43878.2 Da PI: 9.9596

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942159.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.5	4.1e-19	65	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ qe++ Li+a++ +eer ++++ + +W++v ++++++g+ers++qC++kw+nl ++ykk++e+e++ +++s ++p + ++e XP_022942159.1 65 WSLQETMILITAKKLDEERRNKAEqgtarkGSELRWKWVENYCWSQGCERSQNQCNDKWDNLLRDYKKVREHESRA-CDQS-QIPSYWKME 153 ************99999997533333338899**************************************95.7666.899999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MSEPPTTSTE PQRQHQHEQQ QHPHHLLHLP LIHGGASTGT TARINTAVAT SPSTVIVREY 60 RKGNWSLQET MILITAKKLD EERRNKAEQG TARKGSELRW KWVENYCWSQ GCERSQNQCN 120 DKWDNLLRDY KKVREHESRA CDQSQIPSYW KMEKHERKDN NLPSNMAFEV YQALNDVVQR 180 KLRGVSVAVV AGPPPSPSPA EGEAAAGTSS PAASESSSSS SSGREWGQKK EKRERKRRRV 240 GRSIERSASA VAQTLRTCEE QREIRHQQLM ELKKRRLQIQ EARNHIQGQG IADLVAAVAN 300 LSGINNRRRR RRRSEEYECL YSGEEVRMLK EQNEAMQAEL SSVKTELSQL RDQMPSLVRT 360 MMHNVMHNIP PPPPPSTDPG GDAYK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MSEPPTTSTE PQRQHQHEQQ QHPHHLLHLP LIHGGASTGT TARINTAVAT SPSTVIVREY  60
RKGNWSLQET MILITAKKLD EERRNKAEQG TARKGSELRW KWVENYCWSQ GCERSQNQCN  120
DKWDNLLRDY KKVREHESRA CDQSQIPSYW KMEKHERKDN NLPSNMAFEV YQALNDVVQR  180
KLRGVSVAVV AGPPPSPSPA EGEAAAGTSS PAASESSSSS SSGREWGQKK EKRERKRRRV  240
GRSIERSASA VAQTLRTCEE QREIRHQQLM ELKKRRLQIQ EARNHIQGQG IADLVAAVAN  300
LSGINNRRRR RRRSEEYECL YSGEEVRMLK EQNEAMQAEL SSVKTELSQL RDQMPSLVRT  360
MMHNVMHNIP PPPPPSTDPG GDAYK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	239	RKRRR
2	236	240	KRRRV
3	307	312	RRRRRR
4	307	313	RRRRRRR
5	308	313	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-46	Trihelix family protein