PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942541.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 439aa MW: 47739.7 Da PI: 7.529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942541.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5.1e-13	275	320	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L XP_022942541.1 275 NHVEAERQRRQKLNNRFYALRSVVPNV-----SKMDKASLLADAVIYINEL 320 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MDDSPNSMAS TLQQKLQFIL HNRHEWWAYS IFWLASKDHL TQNLVFNWRD GHFRGTRDFV 60 ARPSKPLSGN AQLISFGFDE AAVDRRERSD FVDLEWYYTV SVTRLFNMTD NVVGRVFDSG 120 TYVWLTADDG LDLYECERVK EARMRGIQTL VFVSISGGVL ELGSSELIKQ DWSLAQFAKS 180 VFGCGFANFA PFQEKNQEEG GGGGLIEAHA PPCSAVTKGE MGSSGGGGSG GGGGGGGSSS 240 DSLSDNSDGN FMSNIDNKRG RRPSKSKTES TPPVNHVEAE RQRRQKLNNR FYALRSVVPN 300 VSKMDKASLL ADAVIYINEL KSKIQSLEAK LGGCGGGGGN GGSSGGGGAL EKNCVMNSKN 360 NVEVKIIGSE AMVRVQCRDE NHPSARLLNV LRDLGLQIHH ASLSSVNDLM LQDVVVRVPQ 420 GVVLGEKALR IAILQRLQC

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MDDSPNSMAS TLQQKLQFIL HNRHEWWAYS IFWLASKDHL TQNLVFNWRD GHFRGTRDFV  60
ARPSKPLSGN AQLISFGFDE AAVDRRERSD FVDLEWYYTV SVTRLFNMTD NVVGRVFDSG  120
TYVWLTADDG LDLYECERVK EARMRGIQTL VFVSISGGVL ELGSSELIKQ DWSLAQFAKS  180
VFGCGFANFA PFQEKNQEEG GGGGLIEAHA PPCSAVTKGE MGSSGGGGSG GGGGGGGSSS  240
DSLSDNSDGN FMSNIDNKRG RRPSKSKTES TPPVNHVEAE RQRRQKLNNR FYALRSVVPN  300
VSKMDKASLL ADAVIYINEL KSKIQSLEAK LGGCGGGGGN GGSSGGGGAL EKNCVMNSKN  360
NVEVKIIGSE AMVRVQCRDE NHPSARLLNV LRDLGLQIHH ASLSSVNDLM LQDVVVRVPQ  420
GVVLGEKALR IAILQRLQC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-51	bHLH family protein