PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943005.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 301aa    MW: 33368.9 Da    PI: 5.0197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943005.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-182572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_022943005.1 25 RGPWTVEEDIALINYIANHGDGRWNLLARCAGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
   XP_022943005.1  78 RGNITLEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MDGNKDRMID SGNFHGGDDD GDLRRGPWTV EEDIALINYI ANHGDGRWNL LARCAGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL DLHSRWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKHAKQL KCDVNSKQFK DTMRYLWIPR LVERIQAAAG TTAVDGNGSY GSVAPPLMNG  180
SDFVSTSQVT PSYASENSSS GGGSSDGTQG SSVSELTDCY NNFGCFSVGY GQDTAPPPPP  240
PPPMQSSAVG FFNEGELDFQ AMEQSSCEWL AEDGGVDTSE NFWSTAGPGA DYFWLLQQQL  300
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-81MYB family protein