PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943109.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24785 Da PI: 6.7937

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943109.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	56	110	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+ q++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_022943109.1 56 KKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110 45699************************************************95 PP
2	HD-ZIP_I/II	117.2	9.1e-38	56	147	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++ qv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ e++rLe++ +L+e+l+e XP_022943109.1 56 KKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKLHESVVVEKCRLETQILKLKEQLSE 147 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MNQQESEERE AVQICELYTP LYIQMVPQQQ DNNLGEAKRR RRRKKNRGSE ADAVAKKRKL 60 TAAQVHLLET NFGSEHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYSSL 120 KKLHESVVVE KCRLETQILK LKEQLSEAEK EKERLIMGER GDGPLSSSSP SPSMSMDAVD 180 PTGLGEFGAS FEDVFYYMPE NSCIYGMEWP NPYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	43	KRRRRR
2	38	44	KRRRRRK
3	38	59	KRRRRRKKNRGSEADAVAKKRK
4	39	45	KRRRRRK
5	39	60	KRRRRRKKNRGSEADAVAKKRK
6	40	61	KRRRRRKKNRGSEADAVAKKRK
7	41	62	KRRRRRKKNRGSEADAVAKKRK
8	42	63	KRRRRRKKNRGSEADAVAKKRK
9	43	64	KRRRRRKKNRGSEADAVAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-47	HD-ZIP family protein