PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943160.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 697aa    MW: 77981.5 Da    PI: 7.3881
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943160.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.53.1e-24127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_022943160.1 127 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 217
                     99****************************9643..445569************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_022943160.1 218 NGELRVGVRR 227
                     999*****98 PP
2Auxin_resp101.51.1e-33253331182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+haa+t + F v+Y+Pra  s+F v+++k+++a+++k+ vGmRfkm+fe+eds+err+sGt++gv d++p  WpnS+WrsL
  XP_022943160.1 253 ASHAAATLTRFVVYYKPRA--SQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDDISP-YWPNSQWRSL 331
                     689***************8..9************************************************9.9********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MANRGGGSFS PSNVSSQGRD GLYVELWKAS AGPLVEVPRV HEHVFYFPQG HMEQLEASTN  60
QELNQKLPSF NLPSKILCHV VDVRLLAEQE TDEVYAQISL IPEGNQEEPA TPGPSPGECR  120
KSKVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ QTPTQELIAK DLHGYEWRFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDS FVFLRGENGE LRVGVRRLSR QQSTMPSSVI  240
SSHSMHLGVL ATASHAAATL TRFVVYYKPR ASQFLVSLSK YKEAMNTKFL VGMRFKMRFE  300
GEDSPERRFS GTIIGVDDIS PYWPNSQWRS LRVQWDELAS IQRPERVSPW EIEPFVAPAS  360
QSIPQSISVK NKRPRPPLDI PDSDNSTVTT LRHPVSTQSY DDKTQLSVPA GWHYKQTDIS  420
SNGNSVSRTH NEGSWLTVPN GSVSQHRLKD STEDHKSNSV WSAVFPGVPT AHSTCPTPRT  480
SNPMSDQINE FGEEGRKTEV APSCRLFGIE LIDHSKRPVP PERTADQSNS AANEVTESHV  540
NTLLSSNAEQ QGSNLPKASS KERKLGLLQA LPKEIQHKHN ASTNCRSRTK VQMQGMAVGR  600
AVDLTTLVGY DQLIDEMEKM FDIKGELRPR DKWEIVFTDD EGDTMLMGDY PWQEFCNMVR  660
RIYIWSSQDV KTSSGRRLTM SAIEFDGTAI TSESADS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372376KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein